BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC13ZE05RM1.SCF screened BAC_end
         (937 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1739                                                        1701   0.0  

>3x_Contig1739 
          Length = 22061

 Score = 1701 bits (858), Expect = 0.0
 Identities = 891/897 (99%), Gaps = 4/897 (0%)
 Strand = Plus / Minus

                                                                        
Query: 43   gcttgagttt-acacagttgtggcaaatgtttggtgaaggtaagattgatagattcaaca 101
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2750 gcttgagtttcacacagttgtggcaaatgtttggtgaaggtaagattgatagattcaaca 2691

                                                                        
Query: 102  atattttactgaataaattggcgccatatctttcatcaaacgcatttcaatactggttcg 161
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2690 atattttactgaataaattggcgccatatctttcatcaaacgcatttcaatactggttcg 2631

                                                                        
Query: 162  aaaatggaacgaaaacatttgatcctaatggagccgggttgtatgacactgggttcacaa 221
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2630 aaaatggaacgaaaacatttgatcctaatggagccgggttgtatgacactgggttcacaa 2571

                                                                        
Query: 222  agtgggcattaagacttgcaaaatgggtattcaaagttgcaaatcttacagatgaagtta 281
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2570 agtgggcattaagacttgcaaaatgggtattcaaagttgcaaatcttacagatgaagtta 2511

                                                                        
Query: 282  atatgctatgcaaagctaagaccctagaggagcaaagatctatttgggataaaaagataa 341
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2510 atatgctatgcaaagctaagaccctagaggagcaaagatctatttgggataaaaagataa 2451

                                                                        
Query: 342  agccggtccttttcaacagagtagtgggtaaaatcctcgttggaaacccgttatttttat 401
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2450 agccggtccttttcaacagagtagtgggtaaaatcctcgttggaaacccgttatttttat 2391

                                                                        
Query: 402  ggagtgcacttggagtaccacgtaatcaagcaaaaatgatgggctcttcaacattgcaat 461
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2390 ggagtgcacttggagtaccacgtaatcaagcaaaaatgatgggctcttcaacattgcaat 2331

                                                                        
Query: 462  atattattgacactttggaccctgttattgataattctttgatttccgatgataattact 521
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2330 atattattgacactttggaccctgttattgataattctttgatttccgatgataattact 2271

                                                                        
Query: 522  tttattatttgacattgaagggaagatattcgagtagaagttgtcctgattacct-aaaa 580
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2270 tttattatttgacattgaagggaagatattcgagtagaagttgtcctgattacctgaaaa 2211

                                                                        
Query: 581  gagggtggattcaagtctctttctcgtgaaagtcctgaatctcctctagatagagttaga 640
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2210 gagggtggattcaagtctctttctcgtgaaagtcctgaatctcctctagatagagttaga 2151

                                                                        
Query: 641  cttcatactgacacgttgaaggatgtctgtgagcgtttgtcgaagaaaacagtttcgatt 700
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2150 cttcatactgacacgttgaaggatgtctgtgagcgtttgtcgaagaaaacagtttcgatt 2091

                                                                        
Query: 701  gctataattatggatcacatggattggtttgatccacaaggaactgatgttgacgaagaa 760
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2090 gctataattatggatcacatggattggtttgatccacaaggaactgatgttgacgaagaa 2031

                                                                        
Query: 761  attcaggctttgtggttggccctcaactctcgcggtagggtattattgagatctgcctct 820
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2030 attcaggctttgtggttggccctcaactctcgcggtagggtattattgagatctgcctct 1971

                                                                        
Query: 821  aaaagcccatggtatatcaaaaacttcgaaaagttncggcttcagttgttaagcagtaag 880
            ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 1970 aaaagcccatggtatatcaaaaacttcgaaaagtt-cggcttcagttgtaaagcagtaag 1912

                                                                     
Query: 881  tgcaagataccctggnaaatgtattgatagagttaacatgtatgccagtacctgggt 937
            ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1911 tgcaagataccctggaaaatgtattgatagagttaacatgtatg-cagtacctgggt 1856


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6915
Number of Sequences: 1807
Number of extensions: 6915
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)