BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZE07RM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1358 1647 0.0
>3x_Contig1358
Length = 7912
Score = 1647 bits (831), Expect = 0.0
Identities = 862/869 (99%), Gaps = 3/869 (0%)
Strand = Plus / Minus
Query: 49 taaagaaat-aatgcagatttcaatgttataactggagtccatgcattctttaatatatc 107
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7471 taaagaaatcaatgcagatttcaatgttataactggagtccatgcattctttaatatatc 7412
Query: 108 aaggcaaatagcaccagttacagatgatacattgggatggtacacctttgtgtcaaactt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7411 aaggcaaatagcaccagttacagatgatacattgggatggtacacctttgtgtcaaactt 7352
Query: 168 catttggggtggtttatacggatattccacgggtatatttatatcaacgactaatttacc 227
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 7351 catttggggtggtttatacggatattccacgggtatatttatatcaacgacgaatttacc 7292
Query: 228 tccctcgtatggcgttccactagggccaatgaagctgcccttcatatgatggatatcaga 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7291 tccctcgtatggcgttccactagggccaatgaagctgcccttcatatgatggatatcaga 7232
Query: 288 ctcattgacaaactttaactcaatttgggcctctggatcctctttcaccgcttggatttc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7231 ctcattgacaaactttaactcaatttgggcctctggatcctctttcaccgcttggatttc 7172
Query: 348 cttcaaaattctcttcgaccttagcatcctgttagattaattggtaattcagtggcactt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7171 cttcaaaattctcttcgaccttagcatcctgttagattaattggtaattcagtggcactt 7112
Query: 408 tcaaatgcacccgctccagttattgggtgtaataaaccgttctcgaaagatgtgataact 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7111 tcaaatgcacccgctccagttattgggtgtaataaaccgttctcgaaagatgtgataact 7052
Query: 468 atgaataagcacacgtatatatgtatgatcttttctttccatacattaatggatgttcaa 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7051 atgaataagcacacgtatatatgtatgatcttttctttccatacattaatggatgttcaa 6992
Query: 528 tcgtttgcatacagtatcatcaatgttaatggtatttgatataagaagtagaaactggtg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6991 tcgtttgcatacagtatcatcaatgttaatggtatttgatataagaagtagaaactggtg 6932
Query: 588 atgagggtaacaaagacatgtttccctttcaacataactgagttaaacatcacctataag 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6931 atgagggtaacaaagacatgtttccctttcaacataactgagttaaacatcacctataag 6872
Query: 648 attatagtacattggtatatactggttcgttgtgtatattagatagaaggttcacgtatt 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6871 attatagtacattggtatatactggttcgttgtgtatattagatagaaggttcacgtatt 6812
Query: 708 atgtggttgaagaggaagcaggaagttgactttcatcgtcttgttccgcgaagtgcaaga 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6811 atgtggttgaagaggaagcaggaagttgactttcatcgtcttgttccgcgaagtgcaaga 6752
Query: 768 atgtgtgatctcccatctttcttggagtgataatcaatttaatgacanatattacaccga 827
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 6751 atgtgtgatctcccatctttcttggagtgataatcaatttaatgacaaatattacaccga 6692
Query: 828 acaagattgcaataccgggccacgataaagtatactatccctagcgacatgtttctgcca 887
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 6691 acaagattgcaatacc-ggccacgataaggtatactatccctagcgacatgtttctgcca 6633
Query: 888 ccgat-atactatttgntgtcaagatgta 915
||||| |||||||||| ||||||||||||
Sbjct: 6632 ccgataatactatttgttgtcaagatgta 6604
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6487
Number of Sequences: 1807
Number of extensions: 6487
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)