BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC13ZE08FM1.SCF screened BAC_end
         (936 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1252                                                        1643   0.0  

>3x_Contig1252 
          Length = 5616

 Score = 1643 bits (829), Expect = 0.0
 Identities = 847/851 (99%), Gaps = 2/851 (0%)
 Strand = Plus / Minus

                                                                        
Query: 87   tacaaatgtgtcattaaaagaaaccccgtaagtttctttcatcctttcacggactaataa 146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4139 tacaaatgtgtcattaaaagaaaccccgtaagtttctttcatcctttcacggactaataa 4080

                                                                        
Query: 147  ggtggcttcgtagcgcttattggaggagaacccgacgaagaacgggtcaatctgtttcct 206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4079 ggtggcttcgtagcgcttattggaggagaacccgacgaagaacgggtcaatctgtttcct 4020

                                                                        
Query: 207  gtactgttttttcaaactgtaagtaccggtatcgaaattaccggtcggctcatggtaatc 266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4019 gtactgttttttcaaactgtaagtaccggtatcgaaattaccggtcggctcatggtaatc 3960

                                                                        
Query: 267  actgtactggtttaaatacaagtcaaatgcaggatgcttagtaacgtgttcagggattgc 326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3959 actgtactggtttaaatacaagtcaaatgcaggatgcttagtaacgtgttcagggattgc 3900

                                                                        
Query: 327  ctcaactaatgaactataactgcactttcgaaaacagagagagtggataatttctgattt 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3899 ctcaactaatgaactataactgcactttcgaaaacagagagagtggataatttctgattt 3840

                                                                        
Query: 387  catagtactttcgaaaccttcaactgaagtcgaagcacatagagctctagtttctgtcat 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3839 catagtactttcgaaaccttcaactgaagtcgaagcacatagagctctagtttctgtcat 3780

                                                                        
Query: 447  taaacgtattaaagtaaggaaacattgttctgtcatggcgattgtcaaactctcttctgg 506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3779 taaacgtattaaagtaaggaaacattgttctgtcatggcgattgtcaaactctcttctgg 3720

                                                                        
Query: 507  gtagtcacctattggaattccttctgcccagtatttgagtccccatcgcgttagaaaatt 566
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3719 gtagtcacctattggaattccttctgcccagtatttgagtccccatcgcgttagaaaatt 3660

                                                                        
Query: 567  aaccatgaaatcatgtggatccgcataacacattgaaaactgaacgaggaaaaaatcact 626
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3659 aaccatgaaatcatgtggatccgcataacacattgaaaactgaacgaggaaaaaatcact 3600

                                                                        
Query: 627  aaagtaagtgaattcacgcatgctgtattttgtatacattttcaattgatgctgaattgg 686
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3599 aaagtaagtgaattcacgcatgctgtattttgtatacattttcaattgatgctgaattgg 3540

                                                                        
Query: 687  agagccattgcgtacccaaaacccaacatcaatctgtgatatcataactaaagtgcagag 746
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3539 agagccattgcgtacccaaaacccaacatcaatctgtgatatcataactaaagtgcagag 3480

                                                                        
Query: 747  ggcctgttctgctatccaaagacattcagttggagatttaaaaaattccttgaaattgaa 806
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3479 ggcctgttctgctatccaaagacattcagttggagatttaaaaaattccttgaaattgaa 3420

                                                                        
Query: 807  gtaatctttgagcgtctctggaaggggttcgtatctgccacatttgact-cactgnagta 865
            |||||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||
Sbjct: 3419 gtaatctttgagcgtctctggaaggggttcgtatctgccaca-ttgactccactgaagta 3361

                                                                        
Query: 866  tgaatntaatgtaatacgatatcggattgaaaaaattctgggtttctgatccaactttga 925
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3360 tgaatttaatgtaatacgatatcggattgaaaaaattctgggtttctgatccaactttga 3301

                       
Query: 926  agttaaaaatt 936
            |||||||||||
Sbjct: 3300 agttaaaaatt 3290


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6079
Number of Sequences: 1807
Number of extensions: 6079
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)