BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZE08RM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1794 1637 0.0
>3x_Contig1794
Length = 36744
Score = 1637 bits (826), Expect = 0.0
Identities = 869/880 (98%), Gaps = 3/880 (0%)
Strand = Plus / Minus
Query: 50 taaactggtgtctgacgatatattcaataatctacatccccaaaaggatgatgagatgcc 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32555 taaactggtgtctgacgatatattcaataatctacatccccaaaaggatgatgagatgcc 32496
Query: 110 attaagaagtacccggaagttgctcgatgcattacgtatgttgatgaaacattggaacaa 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32495 attaagaagtacccggaagttgctcgatgcattacgtatgttgatgaaacattggaacaa 32436
Query: 170 aaagttcaaattagaactaacttcaccgtacgaattcaatcatttatatatggttcattg 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32435 aaagttcaaattagaactaacttcaccgtacgaattcaatcatttatatatggttcattg 32376
Query: 230 ggattcggtgttgaagcacaagtgtgaaagtgtcacattcaaaacattcaaaaagttttt 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32375 ggattcggtgttgaagcacaagtgtgaaagtgtcacattcaaaacattcaaaaagttttt 32316
Query: 290 cacaaggatgcgtggaccagccaatattagtgtgcagggttttgtcaccatgctgagagg 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32315 cacaaggatgcgtggaccagccaatattagtgtgcagggttttgtcaccatgctgagagg 32256
Query: 350 ttgtggattgaacgcaagactcattcatagccttcaaccacccgatttcactgatagtaa 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32255 ttgtggattgaacgcaagactcattcatagccttcaaccacccgatttcactgatagtaa 32196
Query: 410 gatctacaataagcgagttgtttggagcttggaaaatgaatgcctaaagtatccgatatt 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32195 gatctacaataagcgagttgtttggagcttggaaaatgaatgcctaaagtatccgatatt 32136
Query: 470 ttggtgcgaagtatgggataaatttgcgaaacaatggatcactatcgatatcgttggtca 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32135 ttggtgcgaagtatgggataaatttgcgaaacaatggatcactatcgatatcgttggtca 32076
Query: 530 agaaataattgaacaagtgcgttataaatcaaaactagaaccaataggtcgtataaattc 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32075 agaaataattgaacaagtgcgttataaatcaaaactagaaccaataggtcgtataaattc 32016
Query: 590 agccttcaatatgatgcgatatgtcatcgctttcgatagaaaacaaggctgcaaagatgt 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32015 agccttcaatatgatgcgatatgtcatcgctttcgatagaaaacaaggctgcaaagatgt 31956
Query: 650 atctcggagatacatagcacatttacaaaataaagttcgaaaaaagaggattacaagaga 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31955 atctcggagatacatagcacatttacaaaataaagttcgaaaaaagaggattacaagaga 31896
Query: 710 agctaaactgaacgaatggtttaacagcattataaagtttttgaataaacgtaataggaa 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 31895 agctaaactgaacgaatggtttaacagcattataaagtttttgaataaacgtaataggaa 31836
Query: 770 caggattgatgattatgaggatgaantatttgatttgcgtaatgaacacgnaggaatccc 829
||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct: 31835 caggattgatgattatgaggatgaatattttgatttgcgtaatgaacacgagggaatccc 31776
Query: 830 agacagcctacaagaca-taagaatcttccgttctacgtcttagagaaagaattgagaag 888
||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||| ||
Sbjct: 31775 agacagcctacaagacattaagaatcatccgttctacgtcttagagaaagatttgag-ag 31717
Query: 889 caaacca-gtattgaaaccgggtgctcagcagtgccgctt 927
||||||| ||||||||||||||||||||||||||| ||||
Sbjct: 31716 caaaccaggtattgaaaccgggtgctcagcagtgcggctt 31677
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7001
Number of Sequences: 1807
Number of extensions: 7001
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)