BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZE10FM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1772 1564 0.0
>3x_Contig1772
Length = 25851
Score = 1564 bits (789), Expect = 0.0
Identities = 823/835 (98%)
Strand = Plus / Plus
Query: 90 acgtgcactatcagatgctttagaaatcattcagcaagttagcaagccagtcgatgttga 149
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1406 acgtgcactatcagatgctttagatatcattcagcaagttagcaagccagtcgatgttga 1465
Query: 150 gaacgatgttgccatgaagaaattgatccaagctgccattggaaccaaatatgttaacca 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1466 gaacgatgttgccatgaagaaattgatccaagctgccattggaaccaaatatgttaacca 1525
Query: 210 ctggtctgaatagatgtgtgaattggcattgaatgcggtcaagaccgtgagaatcgattt 269
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1526 ctggtctgaaaagatgtgtgaattggcattgaatgcggtcaagaccgtgagaatcgattt 1585
Query: 270 gggtactacttcagcaggcgaaactaattatgagattgatatcaagagatacgttcgtat 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1586 gggtactacttcagcaggcgaaactaattatgagattgatatcaagagatacgttcgtat 1645
Query: 330 tgaaaaaattccaggtggtgatgtactagattcgaaggttttgaaaggtgtgatgctaaa 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1646 tgaaaaaattccaggtggtgatgtactagattcgaaggttttgaaaggtgtgatgctaaa 1705
Query: 390 taaagatgtggtgcatccaaaaatgtctcgtttaatagaaaatcctcgcgtcttgttact 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1706 taaagatgtggtgcatccaaaaatgtctcgtttaatagaaaatcctcgcgtcttgttact 1765
Query: 450 agattgtccattggaatacaagaaaggtgaatctcaaactaatattgaaattacaaacga 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1766 agattgtccattggaatacaagaaaggtgaatctcaaactaatattgaaattacaaacga 1825
Query: 510 agatgactggaatagaatcctacagatcgaagaagaacaggtccgtttaatgtgtgaaca 569
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1826 agatgactggtatagaatcctacagatcgaagaagaacaggtccgtttaatgtgtgaaca 1885
Query: 570 aatccttacagtaaaaccaaacgttgtcataactgaaaagggtgtgtctgatttggcaca 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1886 aatccttacagtaaaaccaaacgttgtcataactgaaaagggtgtgtctgatttggcaca 1945
Query: 630 gcattatcttttgaaaggtggatgtagtgttttgagaagagtgaagaaatcggacaataa 689
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1946 gcattatcttttgataggtggatgtagtgttttgagaagagtgaagaaatcggacaataa 2005
Query: 690 cagaattgcaagggtcactggtgcaactattgttaaccgtgttgaggacttgaaagaaag 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2006 cagaattgcaagggtcactggtgcaactattgttaaccgtgttgaggacttgaaagacag 2065
Query: 750 tgatgtcggtaatgacgctggtgtctttagagttgaattaattggtgatgaatatttcac 809
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2066 tgatgtcggtaatgacgctggtgtctttagagttgaattaattggtgatgaatatttcac 2125
Query: 810 tttcctagatgattgcanaaatccaaaggcgtgcactattatgcttagaggagctttcaa 869
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 2126 tttcctagatgattgcaaaaatccaaaggcgtgcactattatgcttagaggagcttccaa 2185
Query: 870 ggacatcttgaacganattgacagaaactttacagatgctatggcagttgcacgt 924
||||||||||||||| ||||||||| |||| ||||||||||||||||||||||
Sbjct: 2186 ggacatcttgaacgaaattgacagatacttacaagatgctatggcagttgcacgt 2240
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6704
Number of Sequences: 1807
Number of extensions: 6704
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)