BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZE10RM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig831 605 e-173
>3x_Contig831
Length = 2020
Score = 605 bits (305), Expect = e-173
Identities = 324/330 (98%), Gaps = 1/330 (0%)
Strand = Plus / Plus
Query: 585 tcttcttcctcttcactaga-cccagcatcactactagcctcattttcgctagcgctttg 643
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 6 tcttcttcctcttcactagaacccagcatcactactagcctcattttcgctagcgctttg 65
Query: 644 gaacccttcaatgtcagattcgtcgctttcggagacagcttctagatcttcactctctaa 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 66 gaacccttcaatgtcagattcgtcgctttcggagacagcttctagatcttcactctctaa 125
Query: 704 agcctttgtctccttaacttgcttcttagaagcctttggttggtccttcttggcttgtct 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 agcctttgtctccttaacttgcttcttagaagcctttggttggtccttcttggcttgtct 185
Query: 764 tgtnagattagacttcanactttttaccattgtaactgtctctttattcttatcgaactt 823
||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 tgtaggattagacttcaaactttttaccattgtaactgtctctttattcttatcgaactt 245
Query: 824 tgtaatcaacgatatgcaatgtttcggtatatatctatagctgatgtgtagactattccc 883
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tgtaatcaacgatatgcaatgtttcggtatatatctatagctgatgtgtagactattccc 305
Query: 884 acanagtgacgatgtgctcacttcttcaaa 913
||| |||||||||||||||||| |||||||
Sbjct: 306 acaaagtgacgatgtgctcactccttcaaa 335
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8688
Number of Sequences: 1807
Number of extensions: 8688
Number of successful extensions: 180
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)