BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZE11RM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1539 1665 0.0
>3x_Contig1539
Length = 11016
Score = 1665 bits (840), Expect = 0.0
Identities = 884/896 (98%), Gaps = 3/896 (0%)
Strand = Plus / Minus
Query: 44 gctttatgaatcacagcttgacattttacaatcacagatagattctttggatcaacaact 103
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 8582 gctttatgaatcacagcttgacaaactacaatcacagatagattctttggatcaacaact 8523
Query: 104 ttactcgatagaaaatgctaatttgaatttggaaactttgaaggcaatgaaacaaggtgc 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8522 ttactcgatagaaaatgctaatttgaatttggaaactttgaaggcaatgaaacaaggtgc 8463
Query: 164 atctgcaatgaaaaatatccataaggggctagatctagataaagtggatgat-cnatgga 222
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 8462 atctgcaatgaaaaatatccataaggggctagatctagataaagtggatgatactatgga 8403
Query: 223 tgaaatcagagaacaagttgaactaaaccaagaaatcagcgaggctatttctaaaccgtt 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8402 tgaaatcagagaacaagttgaactaaaccaagaaatcagcgaggctatttctaaaccgtt 8343
Query: 283 gatattacaagatgagttggacgaggacgaattagaccaggagttggaactgctagaatc 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8342 gatattacaagatgagttggacgaggacgaattagaccaggagttggaactgctagaatc 8283
Query: 343 ggaaaacttgcaaaaggaacacattgcccctgtacctcagcaacaaatacaacaaccttc 402
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8282 ggaaa-cttgcaaaaggaacacattgcccctgtacctcagcaacaaatacaacaaccttc 8224
Query: 403 aatagacttaccgtctgtacccgacgtcaaattatctactccagaacttaatagtgccca 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8223 aatagacttaccgtctgtacccgacgtcaaattatctactccagaacttaatagtgccca 8164
Query: 463 agcagatgaggaagacgaagaagaggatgaagatgaacgtgcattaagagaactacaagc 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8163 agcagatgaggaagacgaagaagaggatgaagatgaacgtgcattaagagaactacaagc 8104
Query: 523 tgaaatgggattgtagaaaaaacaaaaaatgtgcatatgttatacgttttatctttctct 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8103 tgaaatgggattgtagaaaaaacaaaaaatgtgcatatgttatacgttttatctttctct 8044
Query: 583 cccttaatttccctattaccatatattgaatgtcatttaaccttacctttccggtgaata 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8043 cccttaatttccctattaccatatattgaatgtcatttaaccttacctttccggtgaata 7984
Query: 643 gttntaaatgtgtatgatatagagtatctatataatattactactaactgtgattaatct 702
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7983 gttttaaatgtgtatgatatagagtatctatataatattactactaactgtgattaatct 7924
Query: 703 atttcaaagacgaataatgataatcgttctagtattcagtttactaaaacccataacaag 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7923 atttcaaagacgaataatgataatcgttctagtattcagtttactaaaacccataacaag 7864
Query: 763 aaaaatacaaatataatcgcaaatattttcacagccatccatctattattactgatatta 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7863 aaaaatacaaatataatcgcaaatattttcacagccatccatctattattactgatatta 7804
Query: 823 tcaaaatattntagtaattctctctgcgctccatgaatattcatctcaatgtctcctaca 882
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7803 tcaaaatattttagtaattctctctgcgctccatgaatattcatctcaatgtctcctaca 7744
Query: 883 ttatcgtcaattctttgaatcggttctccttggtcttg-nccatatgagccaattg 937
|||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||
Sbjct: 7743 ttatcgtcaattctttgaatcgtttctccttgttcttgtaccatatgagccaattg 7688
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8846
Number of Sequences: 1807
Number of extensions: 8846
Number of successful extensions: 116
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)