BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZE12FM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1594 1425 0.0
>3x_Contig1594
Length = 9813
Score = 1425 bits (719), Expect = 0.0
Identities = 774/789 (98%), Gaps = 3/789 (0%)
Strand = Plus / Minus
Query: 89 aaatgttttaatatctaggtttttaaattgtcaatataaactatcaaatcacttcttaac 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6883 aaatgttttaatatctaggtttttaaattgtcaatataaactatcaaatcacttcttaac 6824
Query: 149 ataatttctctcatattgaattgaattgaattgaatacataaacatcctttcgttcattt 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6823 ataatttctctcatattgaattgaattgaattgaatacataaacatcctttcgttcattt 6764
Query: 209 actcagcttactcttttagtttcactgtcatttcacatttttatatgtttgacgacggca 268
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6763 actcagcttactcaactagtttcactgtcatttcacatttttatatgtttgacgacggca 6704
Query: 269 tcaagcgtgcatttttactcactaatagttggactttccacgcagagttgagtgctgaca 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6703 tcaagcgtgcatttttactcactaatagttggactttccacgcagagttgagtgctgaca 6644
Query: 329 tcgtatcgatgtgattggaattacaaatatatatacttcatgtattcagtggatatcgtt 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6643 tcgtatcgatgtgattggaattacaaatatatatacttcatgtattcagtggatatcgtt 6584
Query: 389 gtacctgtagctagttaaagacaagggtcggtggtattgtgccaaatagtaccttgtcca 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6583 gtacctgtagctagttaaagacaagggtcggtggtattgtgccaaatagtaccttgtcca 6524
Query: 449 gctcattgcaattgagaaatcatttgatggcatgcgacaaattgaatataggacagttgc 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6523 gctcattgcaattgagaaatcatttgatggcatgcgacaaattgaatataggacagttgc 6464
Query: 509 caaaagagcctctataaacagaagaaaaaaaaaggatgtaaaaagagccagaaagaaaag 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6463 caaaagagcctctataaacagaagaaaaaaaaaggatgtaaaaagagccagaaagaaaag 6404
Query: 569 tatcaatgacggttgctgagtatattgggatcaatttgaaggagaattagttcaatatct 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6403 tatcaatgacggttgctgagtatattgggatcaatttgaaggagaattagttcaatatct 6344
Query: 629 ttcgtctccctttgttntcaatgagttgtttcaacgaaacaacgatgaanagaacagctg 688
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 6343 ttcgtctccctttgttttcaatgagttgtttcaacgaaacaacgatgaaaagaacagctg 6284
Query: 689 tgtcacaagatgaacaatttcaatactaactcaaatatcttgtcaatgtctttggctagg 748
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 6283 tgtcacaagatgaacaatttcaatactaactcaaatatcttgtcaatgtc-ttggctagg 6225
Query: 749 ggaaaacatagtactaatggctgtaatgattatacaattacaatattgaagaatgatttt 808
|||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||
Sbjct: 6224 ggaaaacatagtactaatggctgtaatgataatacaataacaataatgaagaatgatttt 6165
Query: 809 agccgcatgaagaaattctgcaaa-taaagaacataca-gttaaaaagtacgggggtaat 866
|||||||||||||||| ||||||| |||||||| ||| |||||||||||||||||||||
Sbjct: 6164 agccgcatgaagaaatcctgcaaagaaaagaacaaacaggttaaaaagtacgggggtaat 6105
Query: 867 ttaaacaaa 875
| |||||||
Sbjct: 6104 taaaacaaa 6096
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8453
Number of Sequences: 1807
Number of extensions: 8453
Number of successful extensions: 78
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)