BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZF01FM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1295 557 e-158
3x_Contig1636 379 e-105
3x_Contig1800 135 2e-31
>3x_Contig1295
Length = 7117
Score = 557 bits (281), Expect = e-158
Identities = 281/281 (100%)
Strand = Plus / Minus
Query: 87 tatgggaatggttcctttgtttctctgtccttgacaaattctaaggaccagaatccacca 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tatgggaatggttcctttgtttctctgtccttgacaaattctaaggaccagaatccacca 222
Query: 147 atacctctgacatcaccgacgatgttatcgtaagctagcagagatttcttcaatttctga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 atacctctgacatcaccgacgatgttatcgtaagctagcagagatttcttcaatttctga 162
Query: 207 cccatcaagttacccttttcaaagatgtttttagttaaatcgttatccaagatcttcttt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 cccatcaagttacccttttcaaagatgtttttagttaaatcgttatccaagatcttcttt 102
Query: 267 tgcacaccaagggcaacggcacagttaaaaccgtgagatgcataagtgtgggaaccgatc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 tgcacaccaagggcaacggcacagttaaaaccgtgagatgcataagtgtgggaaccgatc 42
Query: 327 atacagttcgaaccttcggcgtatgcttttttgatttttgg 367
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 41 atacagttcgaaccttcggcgtatgcttttttgatttttgg 1
>3x_Contig1636
Length = 15667
Score = 379 bits (191), Expect = e-105
Identities = 314/350 (89%), Gaps = 5/350 (1%)
Strand = Plus / Minus
Query: 508 acatgacttcatcgagcatgaacacaacgtcgtacttattacagatacggcggatacctg 567
||||||||| || ||| ||||| ||||||| |||||| | ||||||||||||||||||||
Sbjct: 15622 acatgactttatagaggatgaagacaacgttgtacttctcacagatacggcggatacctg 15563
Query: 568 atagatatccctttggtggtggagtagtacctaaggaggaacctggcaatgtctcaacga 627
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 15562 acagatatccctttggtggtggagtagtacctaaggcggaacctggcaatgtctcaacga 15503
Query: 628 gaaccacagagatagtctctgggtcgttgtctaagatcaattgttccaggctatgaatca 687
||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 15502 gaaatagagagatagtctctgggtcgttgtctaagatcaattgttctaggctatgaatta 15443
Query: 688 atctggcacaatattcttctttcgtttcacctttcttcatgaatctgtatgggtagcata 747
|| |||||||||||||||||| |||| | ||||||||||||| |||||||||||||||
Sbjct: 15442 atatggcacaatattcttcttcggtttaaattttcttcatgaatatgtatgggtagcata 15383
Query: 748 caggcatcttttaggcataattctttttggtccatcaagatttccttggaacctgttcgg 807
||||||| |||||| |||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 15382 aaggcatc-tttagggataattctttttggtccatcaagatttccttg--aactgttcgg 15326
Query: 808 ctttttgaattatagaagatggacaaggccacccaaatggaagccatggt 857
| | ||| |||| | |||||||||||| |||||||| |||||||||||
Sbjct: 15325 c-tcttggattagaagagatggacaagg-cacccaaagtgaagccatggt 15278
>3x_Contig1800
Length = 38778
Score = 135 bits (68), Expect = 2e-31
Identities = 122/140 (87%)
Strand = Plus / Minus
Query: 378 acaccggctatggtaacgtatccggaacccaaggtcttaccaacactttggatatctggg 437
||||| || ||||||||||| || || |||||||||||||| || |||||||||||||
Sbjct: 24837 acaccagcaatggtaacgtaaccagagcccaaggtcttaccgactgtttggatatctgga 24778
Query: 438 gcttcttcagctgtcaagaaattctcccaacagttcaacttaccgttagggttgcttcta 497
|| ||||| | || |||||| || ||||| ||||||||||||||||||||||||| ||||
Sbjct: 24777 gcatcttctggtgccaagaagttttcccagcagttcaacttaccgttagggttgcatcta 24718
Query: 498 ccagtaccacacatgacttc 517
|| |||||||||||||||||
Sbjct: 24717 ccggtaccacacatgacttc 24698
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6522
Number of Sequences: 1807
Number of extensions: 6522
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 3
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)