BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZF02FM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1647 1588 0.0
>3x_Contig1647
Length = 14353
Score = 1588 bits (801), Expect = 0.0
Identities = 837/846 (98%), Gaps = 3/846 (0%)
Strand = Plus / Plus
Query: 86 tctcacggtgataattttgttccaatttgggtcgctttgggattagcagtttctctaact 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4553 tctcacggtgataattttgttccaatttgggtcgctttgggattagcagtttctctaact 4612
Query: 146 ttagtttgcgccttccttatgtctgaatctagacatgaaatggccaggttaaagtcccaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4613 ttagtttgcgccttccttatgtctgaatctagacatgaaatggccaggttaaagtcccaa 4672
Query: 206 actaagttcctgagacgaagggagagcatcaatagtgccagatcacggcaatcagatatg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4673 actaagttcctgagacgaagggagagcatcaatagtgccagatcacggcaatcagatatg 4732
Query: 266 gcaggtggagccaatcggtcatatacagtactgaaatatactgctctacaattcttcgac 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4733 gcaggtggagccaatcggtcatatacagtactgaaatatactgctctacaattcttcgac 4792
Query: 326 tttttgtctccagtgagaaatttatggattgctcctactgccgccggttccttggttcca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4793 tttttgtctccagtgagaaatttatggattgctcctactgccgccggttccttggttcca 4852
Query: 386 agatacatggttttattgcttgttggaatagatatcatgtttgtcatatctacagcggca 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4853 agatacatggttttattgcttgttggaatagatatcatgtttgtcatatctacagcggca 4912
Query: 446 tctataccggcgattgttttagcctttgttttcatgttcggttggagttcagagcaatta 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4913 tctataccggcgattgttttagcctttgttttcatgttcggttggagttcagagcaatta 4972
Query: 506 ggttactttgtgtctttaatgggactcggcaaggctgctgctttattagttctcgcaccg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4973 ggttactttgtgtctttaatgggactcggcaaggctgctgctttattagttctcgcaccg 5032
Query: 566 ctggcactacatcttttgaagaaacgattcaaaacgttatcaaaatctgtggaccacaca 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5033 ctggcactacatcttttgaagaaacgattcaaaacgttatcaaaatctgtggaccacaca 5092
Query: 626 gacatggttgtactacgtgtttcttccttttttattctactttcgctagtagtattagtg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5093 gacatggttgtactacgtgtttcttccttttttattctactttcgctagtagtattagtg 5152
Query: 686 attagtcgaagtgaatccgctgcatacgtatacgttctcctacaaatactgggaagcatg 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5153 attagtcgaagtgaatccgctgcatacgtatacgttctcctacaaatactgggaagcatg 5212
Query: 746 ctatccccaacagtgcaatccacagttatcaaatacggatcgaaaagttctacaggtgag 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5213 ctatccccaacagtgcaatccacagttatcaaatacggatcgaaaagttctacaggtgag 5272
Query: 806 ttatttggtgcaatggcattaattagnaagtgtgcaatgatggtaatgccatcgttattt 865
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 5273 ttatttggtgcaatggcattaattagaagttgtgcaatgatggtaatgccatcgttattt 5332
Query: 866 ttg-aattgtattccag-acagngaatttggacccctta-ttttcgngtacattccctta 922
||| |||||||||| || |||| |||||||||||||||| |||||| |||||||||||||
Sbjct: 5333 ttgaaattgtattcgagaacagtgaatttggaccccttatttttcgtgtacattccctta 5392
Query: 923 gtatta 928
||||||
Sbjct: 5393 gtatta 5398
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5314
Number of Sequences: 1807
Number of extensions: 5314
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)