BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZF02RM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1647 1624 0.0
>3x_Contig1647
Length = 14353
Score = 1624 bits (819), Expect = 0.0
Identities = 873/888 (98%), Gaps = 3/888 (0%)
Strand = Plus / Minus
Query: 43 gcttattgtcccggtttcccttgttgttattctttgagttctctgttccatctccatatc 102
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 11229 gcttattgtcccggtttcccttggtgttattctttgagttctctgttccatctccatatc 11170
Query: 103 caatgccttcgtctcagcaatcacatgcttgcaatcccctaattccccacacatatcgca 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11169 caatgccttcgtctcagcaatcacatgcttgcaatcccctaattccccacacatatcgca 11110
Query: 163 cacatcatacatgctctcaaaccttacgtcgggcctcgttgcgtgatggttatttttttc 222
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 11109 cacatcatacatgctctcaaaccttacgtcgggcctcgttgcgtgatggttaaaaaggtc 11050
Query: 223 tgctatggcaactaatccagaatcatgatagttgtcgatctcaaatactcttgacgatat 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11049 tgctatggcaactaatccagaatcatgatagttgtcgatctcaaatactcttgacgatat 10990
Query: 283 ggcgaatgctatagcagcaaattctttaaaattcgaagagacttgcttctgatcttctaa 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10989 ggcgaatgctatagcagcaaattctttaaaattcgaagagacttgcttctgatcttctaa 10930
Query: 343 attgaagtcgaacaaatacggtattttcagcccaaattcttcgttccacttacgggataa 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10929 attgaagtcgaacaaatacggtattttcagcccaaattcttcgttccacttacgggataa 10870
Query: 403 tgcaataccaactttgaaaccattttctatctcttcttgtggagacaacgcctcgaatac 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10869 tgcaataccaactttgaaaccattttctatctcttcttgtggagacaacgcctcgaatac 10810
Query: 463 aacatccaatgcagtattcttcagcaaaattttctcattatcttcccagtatgccggtgg 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10809 aacatccaatgcagtattcttcagcaaaattttctcattatcttcccagtatgccggtgg 10750
Query: 523 aagatatagactcccattttgtctgtgtgaaatgctcttcaaatatttgtaccaatggct 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10749 aagatatagactcccattttgtctgtgtgaaatgctcttcaaatatttgtaccaatggct 10690
Query: 583 ttcaacttgaaatatgaatacttcataaatatatgcaatgtttaatgccaacatgccttt 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10689 ttcaacttgaaatatgaatacttcataaatatatgcaatgtttaatgccaacatgccttt 10630
Query: 643 tacctcgctatcaaccagtagattggcaatgctactattttctgcagtgaaaacagaaga 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10629 tacctcgctatcaaccagtagattggcaatgctactattttctgcagtgaaaacagaaga 10570
Query: 703 tttcggaatcctaaggagtacagtgtcctccttcaaatcctttaatgcaaacactcctaa 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10569 tttcggaatcctaaggagtacagtgtcctccttcaaatcctttaatgcaaacactcctaa 10510
Query: 763 accaccataatcagatcttctaatctcacagnccggcagtgtggaaaaaccccttggatt 822
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 10509 accaccataatcagatcttctaatctcacag-ccggcagtgtggaaaaaccccttggatt 10451
Query: 823 ccagtacanatgttagaatatcatctgtatcactgggagtctgtattagacattcgtgtt 882
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 10450 ccagtacaaatgttagaatatcatctgtatcact-ggagtctgtattagacattcgtgtt 10392
Query: 883 gntgggttgagagtctncacctgtgaaatatgccccctactatatgcc 930
| |||||||||||||| |||||||||| ||| |||||||||||||||
Sbjct: 10391 gttgggttgagagtcttcacctgtgaataatg-cccctactatatgcc 10345
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6648
Number of Sequences: 1807
Number of extensions: 6648
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)