BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZF03FM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig891 1526 0.0
>3x_Contig891
Length = 5018
Score = 1526 bits (770), Expect = 0.0
Identities = 847/866 (97%), Gaps = 5/866 (0%)
Strand = Plus / Minus
Query: 83 aaattccattccaatatcccatttgctgagctatgtgatactttccaggccattgaagtt 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3624 aaattccattccaatatcccatttgctgagctatgtgatactttccaggccattgaagtt 3565
Query: 143 acctcatctagactagcaatcactgctatctgttccaaatttctatattctgtattagaa 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3564 acctcatctagactagcaatcactgctatctgttccaaatttctatattctgtattagaa 3505
Query: 203 agggatcctgaatttttatttccgattacttaccttttcatccataaattagggcccgat 262
||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 3504 agggatcctgaatcattagttccgtttacttaccttttcatccataaattagggcccgat 3445
Query: 263 tatgaaccgggactcgaattagggttgggtgaatcgttattgatcaagaccatcagtgag 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3444 tatgaaccgggactcgaattagggttgggtgaatcgttattgatcaagaccatcagtgag 3385
Query: 323 gcatgtgggaagtcgatacaacagatcagaaacaagtaccgtgagattggtgatttggga 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3384 gcatgtgggaagtcgatacaacagatcagaaacaagtaccgtgagattggtgatttggga 3325
Query: 383 gaaatcgcgatgcaagcaagaaacgtacaacctacaatgtttaaaccaaaacccttaaca 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3324 gaaatcgcgatgcaagcaagaaacgtacaacctacaatgtttaaaccaaaacccttaaca 3265
Query: 443 gtgggggaagtattcaacaatttggtatcgattgctaaatcgaacggtaaggactctcaa 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3264 gtgggggaagtattcaacaatttggtatcgattgctaaatcgaacggtaaggactctcaa 3205
Query: 503 tctaggaaagggtcgttgatcaagaagatgttaactgcgtgcaaaggttacgaggccaaa 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3204 tctaggaaagggtcgttgatcaagaagatgttaactgcgtgcaaaggttacgaggccaaa 3145
Query: 563 ttcttgatcaggtcactcgaatccaagcttagaatcggattggcagagaaaactgtcttg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3144 ttcttgatcaggtcactcgaatccaagcttagaatcggattggcagagaaaactgtcttg 3085
Query: 623 atatcagtcagtaaggcaattctaacccatgagcataacgggcaagagccgagcacggag 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3084 atatcagtcagtaaggcaattctaacccatgagcataacgggcaagagccgagcacggag 3025
Query: 683 atggtcgaacaagcagagtcattgatccgtgatgcattctgtcaagttcccaactacgaa 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3024 atggtcgaacaagcagagtcattgatccgtgatgcattctgtcaagttcccaactacgaa 2965
Query: 743 atgatcatcaatgttgcgttacagtacggaatcatgaatttgaaccaacatatcaaattg 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2964 atgatcatcaatgttgcgttacagtacggaatcatgaatttgaaccaacatatcaaattg 2905
Query: 803 aggccggggattccctttacaccgatgcttgcgtaacccacaatatcaattcagcga-gt 861
||||||||||||||||| ||||||||||||| ||||||||| ||||| ||||||| ||
Sbjct: 2904 aggccggggattcccttacaaccgatgcttgcgaaacccacaaaatcaa-tcagcgaggt 2846
Query: 862 gttggacagggttcagggcactaagtttacctgtgagtacaaatttgac-gtgaaagtag 920
|||||||||| | ||||||||||||||||||||||||||||||| |||| ||||||| ||
Sbjct: 2845 gttggacaggttccagggcactaagtttacctgtgagtacaaatatgacggtgaaag-ag 2787
Query: 921 c-caagtgccattgtgtagggatgga 945
| ||||||| |||||||||||||||
Sbjct: 2786 cacaagtgcatttgtgtagggatgga 2761
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5352
Number of Sequences: 1807
Number of extensions: 5352
Number of successful extensions: 27
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)