BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZF03RM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1327 1681 0.0
>3x_Contig1327
Length = 7237
Score = 1681 bits (848), Expect = 0.0
Identities = 889/899 (98%), Gaps = 3/899 (0%)
Strand = Plus / Minus
Query: 43 cttgtttgatgatttgattatcctctggatggtacaattcgtatgctaattggaagaacg 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1807 cttgtttgatgatttgattatcctctggatggtacaattcgtatgctaattggaagaacg 1748
Query: 103 tggaatacgcaccggcagagatcccaccaacggaaattttatctgggttaccaccaaagt 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1747 tggaatacgcaccggcagagatcccaccaacggaaattttatctgggttaccaccaaagt 1688
Query: 163 atttgatgtacttgtaagtccattcaatggccaaacgttgatcccagaatccatttttgg 222
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1687 atttgatgtacttgtaagtccattcaatggccaaacgttgatcccagaatccaaaattgg 1628
Query: 223 aagaagcttcatcttcttccaagagttctttaccagagaggaacccaaacatgtttaacc 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1627 aagaagcttcatcttcttccaagagttctttaccagagaggaacccaaacatgtttaacc 1568
Query: 283 tataacctggtgttactagaatgtatttctgggtaaattcttcatcgtcgaacatctcat 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1567 tataacctggtgttactagaatgtatttctgggtaaattcttcatcgtcgaacatctcat 1508
Query: 343 tggtattgaagaattcgctgtaaggagaagagtattgcaaccatccaccatgaatataga 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1507 tggtattgaagaattcgctgtaaggagaagagtattgcaaccatccaccatgaatataga 1448
Query: 403 ctagtacaggccaaccatcggattccttatatttatcacttgagggaacccatatgttca 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1447 ctagtacaggccaaccatcggattccttatatttatcacttgagggaacccatatgttca 1388
Query: 463 acttgttaatgttctcatctgatggggacttagtgtacctgaatgcagggttaggaacac 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1387 acttgttaatgttctcatctgatggggacttagtgtacctgaatgcagggttaggaacac 1328
Query: 523 ttggttgagggcatttcaacccaaattccttatagtcacctgtataatcgaaatcatctg 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1327 ttggttgagggcatttcaacccaaattccttatagtcacctgtataatcgaaatcatctg 1268
Query: 583 ctaatgggaccggcctcttaaaccgattttccttggtgaaaggttccgcatacggaatct 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1267 ctaatgggaccggcctcttaaaccgattttccttggtgaaaggttccgcatacggaatct 1208
Query: 643 gagcgaacctgtgtgttgtgacattgtttgtccttggtgatttgaaagtgtaacctgtca 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1207 gagcgaacctgtgtgttgtgacattgtttgtccttggtgatttgaaagtgtaacctgtca 1148
Query: 703 aagttccttgacctgngattgaaatagggaaaggcgtggtaccttcagtagaaacaactt 762
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1147 aagttccttgacctgggattgaaatagggaaaggcgtggtaccttcagtagaaacaactt 1088
Query: 763 gtcccatgctgctgttgcgttgacttccttgtgtattctgttacttgccttatacttctt 822
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1087 gtcccatgctgttgttgcgttgacttccttgtgtattctgttacttgccttatacttctt 1028
Query: 823 aagatcatcaatacaacttggtaatagctccaattgtcacgcttat-tatatatatgtgg 881
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 1027 aagatcatcaatacaacttggtaatagctccaattgtcacgcttatatatatatatgt-g 969
Query: 882 gcctaatgaaaatgcagcaatgggttcagtatactacccatatctttattggcagacaa 940
||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||
Sbjct: 968 gcctaatgaaaatgcagcaat-ggttcagtatactacccatatcttaaatggcagacaa 911
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7420
Number of Sequences: 1807
Number of extensions: 7420
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)