BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC13ZF04FM1.SCF screened BAC_end
         (920 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig890                                                         1251   0.0  
3x_Contig1423                                                         375   e-103

>3x_Contig890 
          Length = 3684

 Score = 1251 bits (631), Expect = 0.0
 Identities = 664/670 (99%), Gaps = 4/670 (0%)
 Strand = Plus / Minus

                                                                        
Query: 251  ttaaaactctcaaaaattctaaaccaatgacttgttggtcttgttcgaatcgaatagacg 310
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3684 ttaaaactctcaaaaattctaaaccaatgacttgttggtcttgttcgaatcgaatagacg 3625

                                                                        
Query: 311  gtgataactcggccattaactggtatccattaagaacttttcttacaggctatatttata 370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3624 gtgataactcggccattaactggtatccattaagaacttttcttacaggctatatttata 3565

                                                                        
Query: 371  gataaaataaagtttcatagtagcatctaagtgcatttctctcatgtgtgtttctcgagg 430
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3564 gataaaataaagtttcatagtagcatctaagtgcatttctctcatgtgtgtttctcgagg 3505

                                                                        
Query: 431  ctttctctttaccatggacgaagtacagtaaagagtttcattcagttgattaaggcatgt 490
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3504 ctttctctttaccatggacgaagtacagtaaagagtttcattcagttgattaaggcatgt 3445

                                                                        
Query: 491  ttaccgcgtgagtcgaacacctaaatatgagactcagaggcttaaatgaaaacagtaatt 550
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3444 ttaccgcgtgagtcgaacacctaaatatgagactcagaggcttaaatgaaaacagtaatt 3385

                                                                        
Query: 551  cattatgtaagaggagtatgcgttaagcattggtcaaatagtgaagcagtttaagactaa 610
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3384 cattatgtaagaggagtatgcgttaagcattggtcaaatagtgaagcagtttaagactaa 3325

                                                                        
Query: 611  ccactaccatttctgcgtttagttaacggtttcttttccatttagtaaatgtcattacgt 670
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3324 ccactaccatttctgcgtttagttaacggtttcttttccatttagtaaatgtcattacgt 3265

                                                                        
Query: 671  atttttttctgtcagcatgcaaagtgtaaacattggatatcaaaggaaaaagtttatatt 730
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3264 atttttttctgtcagcatgcaaagtgtaaacattggatatcaaaggaaaaagtttatatt 3205

                                                                        
Query: 731  aagaaacgttaaccgttaaaagcatctgttcatttaaagagcacatatcatagcttgcct 790
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3204 aagaaacgttaaccgttaaaagcatctgttcatttaaagagcacatatcatagcttgcct 3145

                                                                        
Query: 791  gaattcattggccgncaaagctttcgagaatgaaactatcactatctacattactacgtt 850
            |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 3144 gaattcattggccgccaaagctttcgagaatgaagctatcactatctacattactacgtt 3085

                                                                        
Query: 851  ggtttactaagttttgggatagcattagcatttcaagat-acttgct-aaaaaatgctct 908
            || |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 3084 gg-ttactaagttttgggatagcattagcatttcaagatgacttgctaaaaaaatgctct 3026

                      
Query: 909  -aatcaggat 917
             |||||||||
Sbjct: 3025 caatcaggat 3016


>3x_Contig1423 
          Length = 8454

 Score =  375 bits (189), Expect = e-103
 Identities = 189/189 (100%)
 Strand = Plus / Minus

                                                                       
Query: 88  tagttccgttttgttcctggttaattcttttctgagtttatctatctgcgaactaacaat 147
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 tagttccgttttgttcctggttaattcttttctgagtttatctatctgcgaactaacaat 130

                                                                       
Query: 148 tggaatatcgcccaaaacgtctttgattggtggtaaatttgcctgctctgcattatcgca 207
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tggaatatcgcccaaaacgtctttgattggtggtaaatttgcctgctctgcattatcgca 70

                                                                       
Query: 208 gctaattggtgcaagcgtggctactacttccatgattaccaagttaaaactctcaaaaat 267
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69  gctaattggtgcaagcgtggctactacttccatgattaccaagttaaaactctcaaaaat 10

                    
Query: 268 tctaaacca 276
           |||||||||
Sbjct: 9   tctaaacca 1


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6257
Number of Sequences: 1807
Number of extensions: 6257
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 2
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)