BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZF05FM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1707 1610 0.0
>3x_Contig1707
Length = 16216
Score = 1610 bits (812), Expect = 0.0
Identities = 838/844 (99%), Gaps = 2/844 (0%)
Strand = Plus / Plus
Query: 87 cgaacatgtccatgtatgaacattgtcctattcacgtgatatatattttgtaccctttca 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4387 cgaacatgtccatgtatgaacattgtcctattcacgtgatatatattttgtaccctttca 4446
Query: 147 acaataatctacgaaaaaaccaataatttgaaaaatatcaagatgcagacaagacaaaac 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4447 acaataatctacgaaaaaaccaataatttgaaaaatatcaagatgcagacaagacaaaac 4506
Query: 207 acatatggatgaagaaaactcatccactcaacctcattgtactttttttctccagtttgc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4507 acatatggatgaagaaaactcatccactcaacctcattgtactttttttctccagtttgc 4566
Query: 267 attgtagaagcagtgaaattgatcaattgtcaaggatccctagtcgtcttccttaagaca 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4567 attgtagaagcagtgaaattgatcaattgtcaaggatccctagtcgtcttccttaagaca 4626
Query: 327 tgcctcccggggaacttatattttctaacctaaggtcaggatcaaggcctgttccaaggg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4627 tgcctcccggggaacttatattttctaacctaaggtcaggatcaaggcctgttccaaggg 4686
Query: 387 acagggatgccctgtcatcagtgcaaagcgatgccatcagcaccaaatcttctgcaaggt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4687 acagggatgccctgtcatcagtgcaaagcgatgccatcagcaccaaatcttctgcaaggt 4746
Query: 447 ataactttcaaggtaccggttcatctgatgcaacttctggtacgaatgttacaattagaa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4747 ataactttcaaggtaccggttcatctgatgcaacttctggtacgaatgttacaattagaa 4806
Query: 507 ataatactttgagtatcggcgtcagctctcaaatgcaaggatctgcgttcaacggccctc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4807 ataatactttgagtatcggcgtcagctctcaaatgcaaggatctgcgttcaacggccctc 4866
Query: 567 ggatgcagttatcgaccaatggtttgaaaaatactcaatctaaagccctgcaggcgcaat 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4867 ggatgcagttatcgaccaatggtttgaaaaatactcaatctaaagccctgcaggcgcaat 4926
Query: 627 cacaagatggttgtcaggatagtaagaatattgcggataatgatagtgacgcagaagcga 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4927 cacaagatggttgtcaggatagtaagaatattgcggataatgatagtgacgcagaagcga 4986
Query: 687 gaacagctaaaagatccctcgagttggaacttgcttttcatgaagcaaggttttcgaatg 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4987 gaacagctaaaagatccctcgagttggaacttgcttttcatgaagcaaggttttcgaatg 5046
Query: 747 aacaagttatggttgacatatcatccattaagggtgccaaagaaggtgatctggctgaac 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5047 aacaagttatggttgacatatcatccattaagggtgccaaagaaggtgatctggctgaac 5106
Query: 807 t-aaaacttacagaacttctcccggatccaaagataaaaagttatatttcatagtgaaag 865
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5107 taaaaacttacagaacttctcccggatccaaagataaaaagttatatttcatagtgaaag 5166
Query: 866 attttgatacatgaacaagaaggagattgaagaagttccaaatttcag-tttatctgggc 924
||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct: 5167 attttgatacagaaacaagaaggagattgaagagtttccaaatttcagttttatctgggc 5226
Query: 925 aact 928
||||
Sbjct: 5227 aact 5230
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7203
Number of Sequences: 1807
Number of extensions: 7203
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)