BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZF05RM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig875 1574 0.0
>3x_Contig875
Length = 2795
Score = 1574 bits (794), Expect = 0.0
Identities = 847/860 (98%), Gaps = 4/860 (0%)
Strand = Plus / Plus
Query: 76 agtcgctggtctgcagtgtgtctgacttctagttttaataatatgcaatggatcattttt 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agtcgctggtctgcagtgtgtctgacttctagttttaataatatgcaatggatcattttt 60
Query: 136 ttttgttagcttcttagcggtaggaagctgcactgacaatgacatcttaccgagagctct 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttttgttagcttcttagcggtaggaagctgcactgacaatgacatcttaccgagagctct 120
Query: 196 tgtgcgacccggaaaaaccttatatataataaaggacagttcagtacttttagagacgct 255
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 121 tgtgcgacccggaaaaaccttagagataataaaggacagttcagtacttttagagacgct 180
Query: 256 accaaaaattttaagcggacgactaatacttagtattaccgcttctgctcttgtgtgtcc 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 accaaaaattttaagcggacgactaatacttagtattaccgcttctgctcttgtgtgtcc 240
Query: 316 caccttatatatatagagagccgttactatgagaatagtcctgtgatttctttatctcat 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 caccttatatatatagagagccgttactatgagaatagtcctgtgatttctttatctcat 300
Query: 376 cgcagtagtcgattaaatgtcagactttgaattttgttgattttttaatcagaactaccg 435
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cgcagtagtcgattaaatgtcagactttgaattttgttgattttttaatcagaactaccg 360
Query: 436 aattaggtatttacaagcgatatattagaataatgttacatagataatatatacaatgaa 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aattaggtatttacaagcgatatattagaataatgttacatagataatatatacaatgaa 420
Query: 496 aaatgtatataagtcaaactgtggggtcaagggggtaaggatggataaggcattttcaaa 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aaatgtatataagtcaaactgtggggtcaagggggtaaggatggataaggcattttcaaa 480
Query: 556 aaatatataccattctaagaagacaggcgtgtttaccgtttgaaaataaacggccttgtt 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aaatatataccattctaagaagacaggcgtgtttaccgtttgaaaataaacggccttgtt 540
Query: 616 ttccaagatgcaccctgatagaatgcggaataagactcgttcataaatgtatggatagta 675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttccaagatgcaccctgatagaatgcggaataagactcgttcataaatgtatggatagta 600
Query: 676 aatcgttagatgagaaaggtttgttacatgtaggacattttctcatcctagcagctaatc 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aatcgttagatgagaaaggtttgttacatgtaggacattttctcatcctagcagctaatc 660
Query: 736 tttctttgcagcaaacatcgcanaacacatgaccgcaagtcttgagggcagtattctttc 795
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 661 tttctttgcagcaaacatcgcaaaacacatgaccgcaagtcttgagggcagtattcttcc 720
Query: 796 aatttttggaacat-atgaacagtagattatagtacggaaaattctcttactctttcggc 854
|||||||||||||| ||||||||||||||||||||||| ||||||||| |||| ||||||
Sbjct: 721 aatttttggaacataatgaacagtagattatagtacgg-aaattctctaactc-ttcggc 778
Query: 855 tagagcaccattgtcaccaccattagagagnaatgggcttggataatttctttgactggg 914
|||||||||||||||||||||||||||||| ||| | |||| ||||||||||||||| ||
Sbjct: 779 tagagcaccattgtcaccaccattagagagtaat-gtcttgtataatttctttgacttgg 837
Query: 915 cttcagcactggaaaccttg 934
||||||||||||||||||||
Sbjct: 838 cttcagcactggaaaccttg 857
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7923
Number of Sequences: 1807
Number of extensions: 7923
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)