BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZF07FM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1806 1528 0.0
>3x_Contig1806
Length = 53694
Score = 1528 bits (771), Expect = 0.0
Identities = 833/848 (98%), Gaps = 5/848 (0%)
Strand = Plus / Minus
Query: 87 attgcagctcctatgataattttgtagtttttctatgttcaacctgaagtataaagaatg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38826 attgcagctcctatgataattttgtagtttttctatgttcaacctgaagtataaagaatg 38767
Query: 147 cacaagcatttttcctaacatgcttctcacagcttccaaaatgtgtgatagaatatgcat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38766 cacaagcatttttcctaacatgcttctcacagcttccaaaatgtgtgatagaatatgcat 38707
Query: 207 agaagtattggattgaaaaagctgcaagataaattcaggtgggg-aaaaaatagaaaaca 265
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 38706 agaagtattggattgaaaaagctgcaagataaattcaggtgggggaaaaaatagaaaaca 38647
Query: 266 gtttcatgaaatggcaaatattaagattcataagaactcattaacctaaggttaaatgcg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38646 gtttcatgaaatggcaaatattaagattcataagaactcattaacctaaggttaaatgcg 38587
Query: 326 ggcttttgtcaatcctttctttgaagacttcgtttttttgacaatatgcgaatcttgtgg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38586 ggcttttgtcaatcctttctttgaagacttcgtttttttgacaatatgcgaatcttgtgg 38527
Query: 386 tcagccttacgagtttgttggctattgtattcatagtaccaaaaaacaaattgtgacatt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38526 tcagccttacgagtttgttggctattgtattcatagtaccaaaaaacaaattgtgacatt 38467
Query: 446 caggtgtttaaagttgtttttttaacggattttctgcgttttccaaaaatcctcataaat 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38466 caggtgtttaaagttgtttttttaacggattttctgcgttttccaaaaatcctcataaat 38407
Query: 506 taaagttacatctctccccttacatcgatttatagaagaaagacataggagtattttgca 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38406 taaagttacatctctccccttacatcgatttatagaagaaagacataggagtattttgca 38347
Query: 566 atttgatacttaatacaagggagggccagcttatagaactataggaaatgattataagat 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38346 atttgatacttaatacaagggagggccagcttatagaactataggaaatgattataagat 38287
Query: 626 atagaaaacaatgtttttacttttgcaagataagcagaaggtgaaagctgagaatagcat 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38286 atagaaaacaatgtttttacttttgcaagataagcagaaggtgaaagctgagaatagcat 38227
Query: 686 aaaattgtttattcagtgaaaaagtgtgtcagaaagatcatgttgataggtataaaaaaa 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38226 aaaattgtttattcagtgaaaaagtgtgtcagaaagatcatgttgataggtataaaaaaa 38167
Query: 746 acgtaaaaatagatcgcattcacagcacctatttgtagtcacgatgctatctagaagacg 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38166 acgtaaaaatagatcgcattcacagcacctatttgtagtcacgatgctatctagaagacg 38107
Query: 806 aaagaaacat-acagntgttttttgccggtttttttcgtcgaggattgaaccanaatgta 864
|||| ||||| |||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 38106 aaag-aacataacagttgttttttgccggtttttttcgtcgaggattgaaccaaaatgac 38048
Query: 865 catgaaaactatgtncaccataacgtgggaggtttgataaaagaattattgagtagtgaa 924
|||||| |||||| ||| ||||||| |||||||||||||||| || |||||||||||||
Sbjct: 38047 aatgaaacctatgtccacaataacgt-ggaggtttgataaaag-ataattgagtagtgaa 37990
Query: 925 ttctctcc 932
| ||||||
Sbjct: 37989 tcctctcc 37982
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7087
Number of Sequences: 1807
Number of extensions: 7087
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)