BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZF07RM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1521 1628 0.0
>3x_Contig1521
Length = 8057
Score = 1628 bits (821), Expect = 0.0
Identities = 873/885 (98%), Gaps = 4/885 (0%)
Strand = Plus / Minus
Query: 43 gctttttcctcagaatagatactttcattttcatagacttccataggcactataccttta 102
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1319 gctttttcctcagaatagatactctcattttcatagacttccataggcactataccttta 1260
Query: 103 aaggcaccattacagagatctacaacctgctctaggtataccttgagctgttcttcccag 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1259 aaggcaccattacagagatctacaacctgctctaggtataccttgagctgttcttcccag 1200
Query: 163 gtcactggctttacggcgtccatggttttgatgctttctatgctcacatcatttgttatc 222
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 1199 gtcactggctttacggcgtccatggttttgatgctttctatgctcacatcagctggtatc 1140
Query: 223 aaatcgttataaatgaaatcgttgtccttaattaaacttttcaacttctcttctattact 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1139 aaatcgttataaatgaaatcgttgtccttaattaaacttttcaacttctcttctattact 1080
Query: 283 gcttttaaccctgttagatcaatctcatccttcacatataccttatagaaaccagcctct 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1079 gcttttaaccctgttagatcaatctcatccttcacatataccttatagaaaccagcctct 1020
Query: 343 tttatttcatgtaccgcaagcttaccataagctatcgcctctccaattttcttagcttcc 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1019 tttatttcatgtaccgcaagcttaccataagctatcgcctctccaattttcttagcttcc 960
Query: 403 tctagcactctcaagtgattgtatgtcgaaatagccctatacaagtgaacctttagggta 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 959 tctagcactctcaagtgattgtatgtcgaaatagccctatacaagtgaacctttagggta 900
Query: 463 attatatccttccatttgtcttctccataaggcgtagtcccaaaagttgctgttgaacta 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 attatatccttccatttgtcttctccataaggcgtagtcccaaaagttgctgttgaacta 840
Query: 523 tcctcataaaattcttgacatttctcatacaaatttaaggcagtatgtgctagtttgctg 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 tcctcataaaattcttgacatttctcatacaaatttaaggcagtatgtgctagtttgctg 780
Query: 583 atcaaagatgctcttttcgaagcatctggtccattaatcaacgtcatgagaaacatttcc 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 atcaaagatgctcttttcgaagcatctggtccattaatcaacgtcatgagaaacatttcc 720
Query: 643 tgagcttcggcgtgcaacaatgtggagagaaaagatgtattttctgctgcacaatcgata 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 tgagcttcggcgtgcaacaatgtggagagaaaagatgtattttctgctgcacaatcgata 660
Query: 703 gaaggtgaattcaaaaagttgttcgacatataatcgaagcaagccattgccttgctcaaa 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 gaaggtgaattcaaaaagttgttcgacatataatcgaagcaagccattgccttgctcaaa 600
Query: 763 taaggaatcgcgctcttataattatcagacattntttttcttagcgatttgagacaatag 822
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 599 taaggaatcgcgctcttataattatcagacatt-tttttcttagcgatttgagacaatag 541
Query: 823 aacaccgatgttgtacatgacagatgatttctcaaagactacagtatgttggcttggatt 882
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
Sbjct: 540 aacaccgatgttgtacatgacagatgatttctcaaagactacagtatgtt-gctt-gaat 483
Query: 883 tttttttctgacaaccctagatggatattctgctttataccacgt 927
|||||||||||||| |||||| |||||||||||| |||||||||
Sbjct: 482 tttttttctgacaa-cctagagtgatattctgcttcataccacgt 439
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7270
Number of Sequences: 1807
Number of extensions: 7270
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)