BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC13ZF09RM1.SCF screened BAC_end
         (946 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1619                                                         143   7e-34

>3x_Contig1619 
          Length = 7770

 Score =  143 bits (72), Expect = 7e-34
 Identities = 115/128 (89%), Gaps = 6/128 (4%)
 Strand = Plus / Plus

                                                                        
Query: 136  ttataagaacgttcaacgactagataatgagttaggttaacaataatttatccacgagtg 195
            |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1283 ttataaaaacgttcaacgactagataatgagttaggttaacaataatttatccacgagcg 1342

                                                                        
Query: 196  cccaatattagataatattatatattttttaataatgacatagtctgaacaatatagtaa 255
            |||||||| | || | ||||||     ||| |||||||||||||||||||||||||| ||
Sbjct: 1343 cccaatatcaaat-agattata-----tttgataatgacatagtctgaacaatatagaaa 1396

                    
Query: 256  tatattga 263
            ||||||||
Sbjct: 1397 tatattga 1404


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,263
Number of Sequences: 1807
Number of extensions: 16263
Number of successful extensions: 1332
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)