BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZF10FM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig399 1388 0.0
>3x_Contig399
Length = 2300
Score = 1388 bits (700), Expect = 0.0
Identities = 717/720 (99%), Gaps = 2/720 (0%)
Strand = Plus / Plus
Query: 202 tgaacaagtagttgaacatgacgtaagacaaaaatgagaatatcttgtgtccggccaaca 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgaacaagtagttgaacatgacgtaagacaaaaatgagaatatcttgtgtccggccaaca 60
Query: 262 aatttctcatctccatcatcattggtacaaatgatttgtttccgaatacccagcgattat 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aatttctcatctccatcatcattggtacaaatgatttgtttccgaatacccagcgattat 120
Query: 322 ctatgtgtttcgccataaacttaacgaaatatttttcatcgagtagtggaccgggataaa 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ctatgtgtttcgccataaacttaacgaaatatttttcatcgagtagtggaccgggataaa 180
Query: 382 cagcaggtgctaatgcaactaaattatctaatttatcactcaatctgaactctgtatttt 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cagcaggtgctaatgcaactaaattatctaatttatcactcaatctgaactctgtatttt 240
Query: 442 tgtagatctcttcaccatttacaagtcccataaaagcttgtgtggtaccctgggaatggg 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgtagatctcttcaccatttacaagtcccataaaagcttgtgtggtaccctgggaatggg 300
Query: 502 ccactaaggtaagcttctcaaacttattttgctttttttggaggacactttcaataaggg 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ccactaaggtaagcttctcaaacttattttgctttttttggaggacactttcaataaggg 360
Query: 562 cttcaaggtcatatctggtcatagaatctagatcccaatcccattcaccgttgggggtca 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 cttcaaggtcatatctggtcatagaatctagatcccaatcccattcaccgttgggggtca 420
Query: 622 gcttttctctatcccatttagagttgaatccacaacgattatttcctaaccacacatcgt 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gcttttctctatcccatttagagttgaatccacaacgattatttcctaaccacacatcgt 480
Query: 682 agcccgaatcgtgcatgtaataagctaatgacttcctgccactagacgcaaaagaaccac 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 agcccgaatcgtgcatgtaataagctaatgacttcctgccactagacgcaaaagaaccac 540
Query: 742 tactttgtaaaagtccatgtaacattaaaacagggtacttcgtgtttgtcttcccctcgt 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tactttgtaaaagtccatgtaacattaaaacagggtacttcgtgtttgtcttcccctcgt 600
Query: 802 tctcgtttc-caaatgccaaagctct-aaatgaagccatcctttgttgttacttcatatt 859
||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 601 tctcgtttctcaaatgccaaagctctaaaatgaagccatcctttgttgttacttcatatt 660
Query: 860 catcgatgattatattgtattgggaatagtaatactggagatttggaactagcttcaaat 919
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 catcgatgataatattgtattgggaatagtaatactggagatttggaactagcttcaaat 720
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6096
Number of Sequences: 1807
Number of extensions: 6096
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)