BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZF10RM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1794 1622 0.0
>3x_Contig1794
Length = 36744
Score = 1622 bits (818), Expect = 0.0
Identities = 858/870 (98%), Gaps = 1/870 (0%)
Strand = Plus / Minus
Query: 42 gcttaaattggaacctaggaaattgaaccgattttgtgtagtatgccaaggaaaataacg 101
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 33230 gcttaaattggaacctaggaaaaggaaccgattttgtgtagtatgccaaggaaaataacg 33171
Query: 102 aacagttatagagtcacagttgaaccaggttacggggttgatttcaatgcaaagaaggtt 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33170 aacagttatagagtcacagttgaaccaggttacggggttgatttcaatgcaaagaaggtt 33111
Query: 162 cgactctatttctagttttcatctttaagtgctagttttgctcagtttaattttt-tttt 220
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 33110 cgactctatttctagttttcatctttaagtgctagttttgctcagtttaataacggtttt 33051
Query: 221 cttttcatgaatgaacgacggaagattatcaagagaatactttgatttgattaaggatgc 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33050 cttttcatgaatgaacgacggaagattatcaagagaatactttgatttgattaaggatgc 32991
Query: 281 acttcaagaggaggaaaaaactggcggaagcggtagcagttcacctcgtaagagacgcaa 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32990 acttcaagaggaggaaaaaactggcggaagcggtagcagttcacctcgtaagagacgcaa 32931
Query: 341 attaaggtctttgcagaaggaaccagaattggaatcggagagcaatcgtgtcgttattac 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32930 attaaggtctttgcagaaggaaccagaattggaatcggagagcaatcgtgtcgttattac 32871
Query: 401 catcgaatcggacgatgaagaacagaataactacgatgatgatgatgatgatgatgatga 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32870 catcgaatcggacgatgaagaacagaataactacgatgatgatgatgatgatgatgatga 32811
Query: 461 tgatgatgaatatgatagtgaagagttcgaagatgtcactgatgcgcctgctaacaatgg 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32810 tgatgatgaatatgatagtgaagagttcgaagatgtcactgatgcgcctgctaacaatgg 32751
Query: 521 aaatatatcaattactatagatacatcagctcagaaaaagtctacgaagaagaagaagaa 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32750 aaatatatcaattactatagatacatcagctcagaaaaagtctacgaagaagaagaagaa 32691
Query: 581 aactgagcatgggttagaccctgcagtgaaagaatttcgtaaaacatgtcatatgttcat 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32690 aactgagcatgggttagaccctgcagtgaaagaatttcgtaaaacatgtcatatgttcat 32631
Query: 641 gctacttactctcgtgtgccactcatatcagaggaacgaatggtgtaacgacgagaagtt 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32630 gctacttactctcgtgtgccactcatatcagaggaacgaatggtgtaacgacgagaagtt 32571
Query: 701 gcagaaaaagcttgctaaactggtgtctgacgatatattcaataatctacatccccaaaa 760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32570 gcagaaaaagcttgctaaactggtgtctgacgatatattcaataatctacatccccaaaa 32511
Query: 761 ggatgatgagatgccattaagaagtacccggaagttgctcgatgcattacgtatgttgat 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32510 ggatgatgagatgccattaagaagtacccggaagttgctcgatgcattacgtatgttgat 32451
Query: 821 gaaacattgggaccaaaagttcaaattagaacttacttcaccgtacgaattcaatcattt 880
|||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 32450 gaaacattggaacaaaaagttcaaattagaactaacttcaccgtacgaattcaatcattt 32391
Query: 881 atatttggttcattgggattcgttgttgaa 910
|||| ||||||||||||||||| |||||||
Sbjct: 32390 atatatggttcattgggattcggtgttgaa 32361
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,543
Number of Sequences: 1807
Number of extensions: 12543
Number of successful extensions: 975
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)