BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZF11FM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig611 1590 0.0
>3x_Contig611
Length = 2628
Score = 1590 bits (802), Expect = 0.0
Identities = 831/838 (99%), Gaps = 2/838 (0%)
Strand = Plus / Plus
Query: 88 tcgtatggtaaaaataaagtcataaattgtaagtgtctgtaaaacaagccaaggagttca 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934 tcgtatggtaaaaataaagtcataaattgtaagtgtctgtaaaacaagccaaggagttca 993
Query: 148 agttctgcctcattttgtttaagcatgtccttcttatatagacaagaatattcttcccag 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994 agttctgcctcattttgtttaagcatgtccttcttatatagacaagaatattcttcccag 1053
Query: 208 ccatttttttggttcataattccaggaatagcctgtacatttgcagtggatttctgaggt 267
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1054 ccatttttttggtccataattccaggaatagcctgtacatttgcagtggatttctgaggt 1113
Query: 268 gttctacccttgactgtaatttcaaatcttgatattagacaataacataaccataatcgt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1114 gttctacccttgactgtaatttcaaatcttgatattagacaataacataaccataatcgt 1173
Query: 328 cttctataatttttatacctaggatcaattctcatgtttccagtcggttcaagaaattgt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1174 cttctataatttttatacctaggatcaattctcatgtttccagtcggttcaagaaattgt 1233
Query: 388 gatggatccctatcaagacccagatcagaaaccaaaggtcccatcatgccaataacacct 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1234 gatggatccctatcaagacccagatcagaaaccaaaggtcccatcatgccaataacacct 1293
Query: 448 tcggatgttgaatcgtagaatatactacataggtcaggttgatgagcaaggatgttccaa 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1294 tcggatgttgaatcgtagaatatactacataggtcaggttgatgagcaaggatgttccaa 1353
Query: 508 agcagcatgtgccaagaaataacttcttcagttcttgactgatagatgttcaatatcgac 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1354 agcagcatgtgccaagaaataacttcttcagttcttgactgatagatgttcaatatcgac 1413
Query: 568 actaattcagcggcagaagatgttaattttttctccagttctgcaaacccttcgatccaa 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1414 actaattcagcggcagaagatgttaattttttctccagttctgcaaacccttcgatccaa 1473
Query: 628 gccctgtcgccatcgtatttatgttgaacatcctgttccatagccctttgatcgaaaagc 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1474 gccctgtcgccatcgtatttatgttgaacatcctgttccatagccctttgatcgaaaagc 1533
Query: 688 cgtagtttccaatgtgatatggatagttgaagtattagataaagaatagagatgttcact 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1534 cgtagtttccaatgtgatatggatagttgaagtattagataaagaatagagatgttcact 1593
Query: 748 aacttcattttgatattagtggtaccgggattcactattatccgctctggattatgtgaa 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1594 aacttcattttgatattagtggtaccgggattcactattatccgctctggattatgtgaa 1653
Query: 808 tccatgtggatcacttcgttaagattttctt-aaagagatcgatatcgatacatggccat 866
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1654 tccatgtggatcacttcgttaagattttcttcaaagagatcgatatcgatacatggccat 1713
Query: 867 atcgggtaaatgtgggtggtagaagttattccaaagtagtcttatattgggttaagaa 924
||||||||||||| ||||||||||||||| | |||||||||| ||||||||| |||||
Sbjct: 1714 atcgggtaaatgt-ggtggtagaagttatccaaaagtagtctaatattgggtaaagaa 1770
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6679
Number of Sequences: 1807
Number of extensions: 6679
Number of successful extensions: 27
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)