BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZF11RM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1486 1633 0.0
>3x_Contig1486
Length = 12131
Score = 1633 bits (824), Expect = 0.0
Identities = 871/885 (98%), Gaps = 2/885 (0%)
Strand = Plus / Plus
Query: 43 caatttttggagcaatttttaaagagcatagaagcatggcaaatctgcttcgaagtatta 102
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2969 caatttttggagcaatttcaaaagagcatagaagcatggcaaatctgcttcgaagtatta 3028
Query: 103 agcaagcatgaagcagacaacttacagttgcaaatgtttgcttgtcaaactctagtgaac 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3029 agcaagcatgaagcagacaacttacagttgcaaatgtttgcttgtcaaactctagtgaac 3088
Query: 163 attgtcacctatgatctaaaccaggtcaataccgaattagagagttt-aatggatagctc 221
| |||||||||||||||||||||||||||||||||||||||||||| || ||| |||||
Sbjct: 3089 aaagtcacctatgatctaaaccaggtcaataccgaattagagagtttcaagggaaagctc 3148
Query: 222 tttgagttcatcgctatgtatgaagagaagatcatagtaacacagttgaacgtggcacta 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3149 tttgagttcatcgctatgtatgaagagaagatcatagtaacacagttgaacgtggcacta 3208
Query: 282 gcccgatttaccattcagtatcttgattggaggaatccgctagttgaaattattaatact 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3209 gcccgatttaccattcagtatcttgattggaggaatccgctagttgaaattattaatact 3268
Query: 342 ctaaatggtcttccgggaaagttactactgtttttgaagattctcccagaggaaacattg 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3269 ctaaatggtcttccgggaaagttactactgtttttgaagattctcccagaggaaacattg 3328
Query: 402 gatatcaaatccactcctctatcccaagatgaatttgagtgtagaacacacgaacttata 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3329 gatatcaaatccactcctctatcccaagatgaatttgagtgtagaacacacgaacttata 3388
Query: 462 gataacattggagaagacgtattgaaatttttgatttcatgtttggatagagtcggaact 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3389 gataacattggagaagacgtattgaaatttttgatttcatgtttggatagagtcggaact 3448
Query: 522 gaaggcatatctgcttctaaaatcatttcgtgctttggatcgtggtgttatgaatttcca 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3449 gaaggcatatctgcttctaaaatcatttcgtgctttggatcgtggtgttatgaatttcca 3508
Query: 582 atagaacaggtattacaagtgactccattgataaacaccgtgttccaagtcttgcatact 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3509 atagaacaggtattacaagtgactccattgataaacaccgtgttccaagtcttgcatact 3568
Query: 642 tcatatgatactgattctgattcttttgaagctgcagtagaatgcttatgtgtgttatta 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3569 tcatatgatactgattctgattcttttgaagctgcagtagaatgcttatgtgtgttatta 3628
Query: 702 agagaaacgagagacgcagccaacgatacaatcatacatgcgctntacgagcaactttta 761
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 3629 agagaaacgagagacgcagccaacgatacaatcatacatgcgctttacgagcaactttta 3688
Query: 762 gctttgcaacanaagctattgccaatcacaaccatttctgactgggaaagatacgaagag 821
||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 3689 gctttgcaacaaaagctattgccaatcacaaccatttctgactgggaagaatacgaagag 3748
Query: 822 attatggatccactcacacgtttattcgttgaagctggcgaagcgtggtgtgtttntctt 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 3749 attatggatccactcacacgtttattcgttgaagctggcgaagcgtggtgtgtttttctt 3808
Query: 882 gcaaagaat-ctgccttattcaaaccattgggtgaagtcatcttg 925
||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 3809 gcaaagaatcctgccttattcaaaccattggttgaagtcatcttg 3853
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6640
Number of Sequences: 1807
Number of extensions: 6640
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)