BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZF12FM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1328 1562 0.0
>3x_Contig1328
Length = 7255
Score = 1562 bits (788), Expect = 0.0
Identities = 814/820 (99%), Gaps = 2/820 (0%)
Strand = Plus / Minus
Query: 87 tgaaaattgaagaaaaccagtttataagttaaagttatcggcgtattcaacttagaacag 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2913 tgaaaattgaagaaaaccagtttataagttaaagttatcggcgtattcaacttagaacag 2854
Query: 147 aaaacagggggaaggttcaaagctgtcatcatccagctacacgatatgagcacctctgca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2853 aaaacagggggaaggttcaaagctgtcatcatccagctacacgatatgagcacctctgca 2794
Query: 207 ccatatctactcggacggtatgtatcgtgaaataaagttgttgcttaaaaaggctttact 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2793 ccatatctactcggacggtatgtatcgtgaaataaagttgttgcttaaaaaggctttact 2734
Query: 267 ctagcagaagaggcccaatatgtttactaacttaattcttcattgtgactttgatacagt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2733 ctagcagaagaggcccaatatgtttactaacttaattcttcattgtgactttgatacagt 2674
Query: 327 ttcctagacccggtgtttgctatagcggtcggagcgtttagttatcactcgtatgagaaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2673 ttcctagacccggtgtttgctatagcggtcggagcgtttagttatcactcgtatgagaaa 2614
Query: 387 aaggtgcaaagacctgagggacatactttgaatgagctactaaagaagaagtgggataga 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2613 aaggtgcaaagacctgagggacatactttgaatgagctactaaagaagaagtgggataga 2554
Query: 447 atgagtaataaatgagtggcttgcagtttattgcgaccttctctaaagaattaaaaattg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2553 atgagtaataaatgagtggcttgcagtttattgcgaccttctctaaagaattaaaaattg 2494
Query: 507 atttttagtgttaatgatactaagagtacattgatgcaaacctggtactcagaataccgt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2493 atttttagtgttaatgatactaagagtacattgatgcaaacctggtactcagaataccgt 2434
Query: 567 ttgatagagaatgttgccatatatttggaggaatctttcattaaattaacatttctattt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2433 ttgatagagaatgttgccatatatttggaggaatctttcattaaattaacatttctattt 2374
Query: 627 ttacatatatgtatactttataattaaaacaatcaaaaaattattaatgtgtctatcgag 686
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2373 ttacatatatgtatactttataattaaaacaatcaaaaaattattaatgtgtatatcgag 2314
Query: 687 ggggaagtagtgaattt-acattcaatttttcgttagtgtttaggtgaattctttttcag 745
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2313 ggggaagtagtgaatttcacattcaatttttcgttagtgtttaggtgaattctttttcag 2254
Query: 746 cgaacgatagctgtcatattg-ttaagagcccaccttcattaccaagtttcagagaattg 804
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 2253 cgaacgatagctgtcatattgtttaagagcccaccttcattaccaagtttcagagaattg 2194
Query: 805 gaacatatcatcagattgtaacattatgtttccagctctgtcattttccaatctagtatc 864
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 2193 gaacatatcatcagattgtaacattaggtttccagctctgtcattttccaatctagtatc 2134
Query: 865 aaaagtaaaacccgagaaatagttatttagttgttgctct 904
||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 2133 aaaagtaaatcccgagacatagttatttagttgttgctct 2094
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7395
Number of Sequences: 1807
Number of extensions: 7395
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)