BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZF12RM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1281 757 0.0
3x_Contig748 682 0.0
>3x_Contig1281
Length = 7825
Score = 757 bits (382), Expect = 0.0
Identities = 401/406 (98%), Gaps = 1/406 (0%)
Strand = Plus / Plus
Query: 41 ctttcagtttcaggaaggctggtttattttttagcagtaggcgattcggtaagcgttcta 100
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 7420 ctttcagtttcaggaaggctggccgattttttagcagtaggcgattcggtaagcgttcta 7479
Query: 101 ttttgttccacgaaagcttcgatagtactatcagcagtgatgttatcaaaaattgatgcc 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7480 ttttgttccacgaaagcttcgatagtactatcagcagtgatgttatcaaaaattgatgcc 7539
Query: 161 ccggatttaccatctagtaatttctttctagccaatgcacgtttacgagttctag-tgga 219
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 7540 ccggatttaccatctagtaatttctttctagccaatgcacgtttacgagtactagatgga 7599
Query: 220 tctccttttgaaggagctgcatttttcaatttatccaaaagcttctctatatcgtcccta 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7600 tctccttttgaaggagctgcatttttcaatttatccaaaagcttctctatatcgtcccta 7659
Query: 280 tcatcagacggttcttgcgaagtgcttaaattttttgctgttgccttactatctgcctcc 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7660 tcatcagacggttcttgcgaagtgcttaaattttttgctgttgccttactatctgcctcc 7719
Query: 340 tgttgtttccgttgttgatcttcaatcattttctttctcctttcgtaagcacgttcttct 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7720 tgttgtttccgttgttgatcttcaatcattttctttctcctttcgtaagcacgttcttct 7779
Query: 400 tcttccagtttgacattatgagttttagctttcttgaattcggtaa 445
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7780 tcttccagtttgacattatgagttttagctttcttgaattcggtaa 7825
>3x_Contig748
Length = 2621
Score = 682 bits (344), Expect = 0.0
Identities = 399/411 (97%), Gaps = 5/411 (1%)
Strand = Plus / Minus
Query: 521 gattttcaaattccagcaaacttaatttgatttcatcgcttagaagatcagctttctttc 580
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2621 gattttgaaattccagcaaacttaatttgatttcatcgcttagaagatcagctttctttc 2562
Query: 581 tagcttcaggtaaaaccggtactaccttatttaaaacacgatctaacggatggaatttag 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2561 tagcttcaggtaaaaccggtactaccttatttaaaacacgatctaacggatggaatttag 2502
Query: 641 aagggtcacttaggtttccaatttcaatagaacgctcaacgttaattactgactgtgaaa 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2501 aagggtcacttaggtttccaatttcaatagaacgctcaacgttaattactgactgtgaaa 2442
Query: 701 attccttacaatcagttaccaactgttcgatggatatttttgttacgctaaaaa-aggct 759
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2441 attccttacaatcagttaccaactgttcgatggatatttttgttacgctaaaaataggct 2382
Query: 760 caagctcttccacganatggctgtattcgggataattttcacgaattatcttttccacat 819
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2381 caagctcttccacgaaatggctgtattcgggataattttcacgaattatcttttccacat 2322
Query: 820 agttcaaaaaagtcatactgttccttttcatcttttatggaaggtcaatcttttgta-gg 878
|||||||||||||||||||||| |||||||||||| || ||||||||||| |||||| ||
Sbjct: 2321 agttcaaaaaagtcatactgtt-cttttcatctttaat-gaaggtcaatc-tttgtaggg 2265
Query: 879 tgcttagcttgaaccccttgacttgctttgaagaatcattcatattattac 929
|||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct: 2264 tgcttagcttgaacccctgagcttgctttgaagaatcattcatataattac 2214
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9290
Number of Sequences: 1807
Number of extensions: 9290
Number of successful extensions: 67
Number of sequences better than 1.0e-20: 2
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)