BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZG06FM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1487 1628 0.0
>3x_Contig1487
Length = 9002
Score = 1628 bits (821), Expect = 0.0
Identities = 853/861 (99%), Gaps = 2/861 (0%)
Strand = Plus / Plus
Query: 86 tacaatcagacgaataacttctgttgatccaagtgcaatacataaagatagtgaagttag 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7401 tacaatcagacgaataacttctgttgatccaagtgcaatacataaagatagtgaagttag 7460
Query: 146 aaagaaaagactacaagatctttctttaacagtcctgagtaagggttaatatagattcat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7461 aaagaaaagactacaagatctttctttaacagtcctgagtaagggttaatatagattcat 7520
Query: 206 ttcagtgctgttactagacatcaattttaagacgattgctctaatttgatagtgaaatat 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7521 ttcagtgctgttactagacatcaattttaagacgattgctctaatttgatagtgaaatat 7580
Query: 266 aaagggctgtttctactgctcaacatattatattgatctgaaaagttttccaacttttgg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7581 aaagggctgtttctactgctcaacatattatattgatctgaaaagttttccaacttttgg 7640
Query: 326 cgtgctgattgagagcatttatcgatattaggtatcataatctagtgactgagtagaggg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7641 cgtgctgattgagagcatttatcgatattaggtatcataatctagtgactgagtagaggg 7700
Query: 386 ttttggaaactaggtgaaataatagattattttgtcgccagtgctttttcgttgctgaag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7701 ttttggaaactaggtgaaataatagattattttgtcgccagtgctttttcgttgctgaag 7760
Query: 446 agcggattgagcataagtgtgaaatactcaatgccgatgtcaaagagagacaaacggaaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7761 agcggattgagcataagtgtgaaatactcaatgccgatgtcaaagagagacaaacggaaa 7820
Query: 506 tcggaggtgctgatagctgcgcaatcgttagaccaagaggttaagcatgtgaagaacctg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7821 tcggaggtgctgatagctgcgcaatcgttagaccaagaggttaagcatgtgaagaacctg 7880
Query: 566 aaacgcctttcaataggatccatggatctactaatggatcctgaattggaataccgtgta 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7881 aaacgcctttcaataggatccatggatctactaatggatcctgaattggaataccgtgta 7940
Query: 626 tcatcacgacaaggaacaggaacagcaacggatcaagatacaggaacgccctacatcgct 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7941 tcatcacgacaaggaacaggaacagcaacggatcaagatacaggaacgccctacatcgct 8000
Query: 686 acctcgtcgataaaaactgaaactactaaatcagaacaaggggaacaagagtatggaaat 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8001 acctcgtcgataaaaactgaaactactaaatcagaacaaggggaacaagagtatggaaat 8060
Query: 746 gatgataatcaggaaacacaattgtctcattcaagtttgagtgaggatgatactaccact 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8061 gatgataatcaggaaacacaattgtctcattcaagtttgagtgaggatgatactaccact 8120
Query: 806 gctggggcagcagttgaaagagaggatgatagttattcttttacagatgatagcatggac 865
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 8121 gctggggcagcagttgaagaagaggatgatagttattcttttacagatgatagcatggac 8180
Query: 866 gttacaaatgccgagtacttggattaagacgctcaggc-aatttgataaatattaa-tat 923
|||||||||||||||||||||||| ||||||||||||| ||| ||||||||| ||| |||
Sbjct: 8181 gttacaaatgccgagtacttggataaagacgctcaggcaaatatgataaataataattat 8240
Query: 924 cggcatgagccactttcaagg 944
||||||||||||||| |||||
Sbjct: 8241 cggcatgagccacttccaagg 8261
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6487
Number of Sequences: 1807
Number of extensions: 6487
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)