BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZG06RM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1743 1546 0.0
>3x_Contig1743
Length = 20172
Score = 1546 bits (780), Expect = 0.0
Identities = 855/872 (98%), Gaps = 6/872 (0%)
Strand = Plus / Minus
Query: 43 cttttttaaacttagcactaacatatcaatattatgaaaagaaagactattattcgtact 102
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 14310 cttttttaaacttagcactaacagaacaatattatgaaaagaaagactattattcgtact 14251
Query: 103 agtattcctaaatgtcagtcttcctcttatgtttttttttgtttctttgtttcatacgta 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14250 agtattcctaaatgtcagtcttcctcttatgtttttttttgtttctttgtttcatacgta 14191
Query: 163 acgctcaatagcatcaacttatagaaaattatagacattaacttaactattcttag-ttg 221
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 14190 acgctcaatagcatcaacttatagaaaattatagacattaacttaactattctaaggttg 14131
Query: 222 taatatcgaaatcagctggcggttgcggaggacggacaatcttattcgctggtttccata 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14130 taatatcgaaatcagctggcggttgcggaggacggacaatcttattcgctggtttccata 14071
Query: 282 tttgaagaacgttttcttcttcgacgctgcacattagccatggaacatttgaattatgag 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14070 tttgaagaacgttttcttcttcgacgctgcacattagccatggaacatttgaattatgag 14011
Query: 342 aaaactcgttaacggggcttctgtgaccgccgtgcatcatgaatagctcaggaactccgt 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14010 aaaactcgttaacggggcttctgtgaccgccgtgcatcatgaatagctcaggaactccgt 13951
Query: 402 cgtatgcgtcatctggttgttgttctgctccaatattgaataagtcccacataataattc 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13950 cgtatgcgtcatctggttgttgttctgctccaatattgaataagtcccacataataattc 13891
Query: 462 ttcggtcagaaccacttgaagttaataatccatcttgatgaggagaaaactcgagtgagg 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13890 ttcggtcagaaccacttgaagttaataatccatcttgatgaggagaaaactcgagtgagg 13831
Query: 522 taacagaatcttcatgacctgccattgagtgcaatggtttttgcaatctacgtaaatcat 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13830 taacagaatcttcatgacctgccattgagtgcaatggtttttgcaatctacgtaaatcat 13771
Query: 582 agagatagacgttagagtctgtacctgctgctgcaagaaggttttctgaacgcttactga 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13770 agagatagacgttagagtctgtacctgctgctgcaagaaggttttctgaacgcttactga 13711
Query: 642 atgctaatgtattgaaggcagaggagaccgataacttttgaatggccctatcactattgg 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13710 atgctaatgtattgaaggcagaggagaccgataacttttgaatggccctatcactattgg 13651
Query: 702 tgtcatgaattattaatgtgttatccttggatactgttccaaataaactgctttgggaat 761
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct: 13650 tgtcatgaattattaatgtgttatcctcggatactgttccaaataaactgcttt-ggaat 13592
Query: 762 tcgtgccatttgcagtcatttactatatcagtatgcacatcaaattgttgagacggcgat 821
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 13591 tcgtgccatttgcagtcatttactatatcagtatgcacatcaaatgtttgagacggcgat 13532
Query: 822 ttgtttgcagtggaagtgacatctcataaagc-acagtgccatcattcgtatgcaaaagg 880
||||||||||||||||||||||| |||||||| |||||||||||| ||| ||||| || |
Sbjct: 13531 ttgtttgcagtggaagtgacatcccataaagcaacagtgccatca-tcggatgcagaaag 13473
Query: 881 ta-ctggccagaaacag-gggattggacgcca 910
|| |||||||||||||| ||||||| ||||||
Sbjct: 13472 tagctggccagaaacagtgggattgaacgcca 13441
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7898
Number of Sequences: 1807
Number of extensions: 7898
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)