BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZG10RM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig425 1624 0.0
>3x_Contig425
Length = 1844
Score = 1624 bits (819), Expect = 0.0
Identities = 865/877 (98%), Gaps = 3/877 (0%)
Strand = Plus / Plus
Query: 44 agcttgttaaagttccttcactgttacctgagaaaagaagctttctggacggtagtccag 103
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 224 agcttgttaaagttccttcactgctacctgagaaaagaagctttctggacggtagtccag 283
Query: 104 tgaatgcaatattatctaatgttaaacagttttggaaccctttattcgataaatcccatg 163
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 cgaatgcaatattatctaatgttaaacagttttggaaccctttattcgataaatcccatg 343
Query: 164 attttttgcatgttgtcgtcgacagatttgtccaatctaatgaccaacacttgtcttatc 223
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 344 attttttgcatgttgtcgtcgacagatttgtccaatctaatgaccaacacttgaccgatc 403
Query: 224 tcatcatcactacaggaaaacaacatatcattaaactgacgcaaatctctaacccaagag 283
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 -catcatcactacaggaaaacaacatatcattaaactgacgcaaatctctaacccaagag 462
Query: 284 ttatgatctgtcaatacagctattaccttaaaagttgtatccaacgggtttggtcgcggt 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ttatgatctgtcaatacagctattaccttaaaagttgtatccaacgggtttggtcgcggt 522
Query: 344 ggtctatgcgggataaactttggcaaagacactttccaaagtcgaatggtaccatcacgg 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 ggtctatgcgggataaactttggcaaagacactttccaaagtcgaatggtaccatcacgg 582
Query: 404 gacgcggatgcgacatgttgaaatcccaaaggctgatattgcggttgcagatgttgtgga 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 gacgcggatgcgacatgttgaaatcccaaaggctgatattgcggttgcagatgttgtgga 642
Query: 464 tctggtataagaataagaactttttctacggggaagtcatgtcctatccccatggaaagc 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 tctggtataagaataagaactttttctacggggaagtcatgtcctatccccatggaaagc 702
Query: 524 ccgttgcctgatggccaatgtgtcaatctgatggcagaatcattagacccagtcaagaca 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 ccgttgcctgatggccaatgtgtcaatctgatggcagaatcattagacccagtcaagaca 762
Query: 584 aattcgccatgaacatgaagagatctgatccattgggtatgaggctggaaagatttgata 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 aattcgccatgaacatgaagagatctgatccattgggtatgaggctggaaagatttgata 822
Query: 644 caccaaccgttggatatatcccagattttcaagtaaaggtctctggagcaagtagctagt 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 caccaaccgttggatatatcccagattttcaagtaaaggtctctggagcaagtagctagt 882
Query: 704 agaagatccgcacctctttcaaagaattggcagtctgataccgtgtgttcatgcccggca 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 agaagatccgcacctctttcaaagaattggcagtctgataccgtgtgttcatgcccggca 942
Query: 764 agcgttttgatgtgagacagcgttgaatccaattctagttcccatatttttgttattcaa 823
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct: 943 agcgttttgatgtgagacagcgttgaatccaattctagttcccata-ttttggtattcaa 1001
Query: 824 attcttcgaggtggtagccaaatatgccggtcttccattctcattgggtaaagganatcg 883
|| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 1002 atccttcgaggtggtagccaaatatgccggtcttccattctcattgggtaaa-gagatcg 1060
Query: 884 anatcgatgttataccgtccatatgagccatggtaga 920
| |||||||||||||||||||||||||||||||||||
Sbjct: 1061 agatcgatgttataccgtccatatgagccatggtaga 1097
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6088
Number of Sequences: 1807
Number of extensions: 6088
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)