BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZH01FM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1770 1538 0.0
>3x_Contig1770
Length = 29267
Score = 1538 bits (776), Expect = 0.0
Identities = 825/836 (98%), Gaps = 4/836 (0%)
Strand = Plus / Minus
Query: 86 atcaattattatagaaagacgggagaaacagacagctccagaccaaaattacccgttggt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8035 atcaattattatagaaagacgggagaaacagacagctccagaccaaaattacccgttggt 7976
Query: 146 gagactcatgtattaggtgtgcaggataaatcaccattttggaattttggtttcgtcagt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7975 gagactcatgtattaggtgtgcaggataaatcaccattttggaattttggtttcgtcagt 7916
Query: 206 ccaggaaacattgttcccactttatataacaatatggtcagagcccccgttttcaaacat 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7915 ccaggaaacattgttcccactttatataacaatatggtcagagcccccgttttcaaacat 7856
Query: 266 gaggtctctaagaccgatttccttctggtgaaaagtcttggtaatgggtccggtaacaga 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7855 gaggtctctaagaccgatttccttctggtgaaaagtcttggtaatgggtccggtaacaga 7796
Query: 326 ttctatttgcgtcaaattaatcatctctttgctgtcggtcaaacgttcccagtggtcgaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7795 ttctatttgcgtcaaattaatcatctctttgctgtcggtcaaacgttcccagtggtcgaa 7736
Query: 386 gttcctggtccgaattctagaaaggttactgctatgggtaagaaccgtttgaggatggtt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7735 gttcctggtccgaattctagaaaggttactgctatgggtaagaaccgtttgaggatggtt 7676
Query: 446 gtgtatcgtattttgaacaaatctccggaaaacagactgttagtgaaacaggtggctcgt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7675 gtgtatcgtattttgaacaaatctccggaaaacagactgttagtgaaacaggtggctcgt 7616
Query: 506 catttcccagaacaaaatgatatgcaaaacagacaaagattaaaggaattcatgaagtat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7615 catttcccagaacaaaatgatatgcaaaacagacaaagattaaaggaattcatgaagtat 7556
Query: 566 caacgtgaaggtgatgatcaaggtttctggaaactaaaggagggagaagttttactggat 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7555 caacgtgaaggtgatgatcaaggtttctggaaactaaaggagggagaagttttactggat 7496
Query: 626 aacgaaaacgtgaagaaaatggttactcctgaagatgtttcactcgttgaatccatgtat 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7495 aacgaaaacgtgaagaaaatggttactcctgaagatgtttcactcgttgaatccatgtat 7436
Query: 686 tatggtcaacagttccaggaagatattgatttctacaacttcgatgaaagagctaaggag 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7435 tatggtcaacagttccaggaagatattgatttctacaacttcgatgaaagagctaaggag 7376
Query: 746 ttggaggagaacttaatattttggaatgctaccaagaattttcttgaatgctacacagat 805
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 7375 ttggaggagaacttaatattttggaatgctaccaagaa-tttcttgaatgctacacagat 7317
Query: 806 gagagcaatgattcaaatacattggacctggtgatcctactggttgtggtgaaagttttt 865
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||
Sbjct: 7316 gagagcaatgattcaaataca-tggacctggtgatcctactggttgtggtg-aaggtttt 7259
Query: 866 tcgtttttggaaacctctattaaggcggggtttgttaaaatccggttaaagggatc 921
||||||||| |||||||||| |||| ||||||| |||||||||||| || |||||
Sbjct: 7258 tcgtttttgaaaacctctatgaagggtgggtttg-taaaatccggttcaaaggatc 7204
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6392
Number of Sequences: 1807
Number of extensions: 6392
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)