BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZH02RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1496 1643 0.0
>3x_Contig1496
Length = 9544
Score = 1643 bits (829), Expect = 0.0
Identities = 869/879 (98%), Gaps = 3/879 (0%)
Strand = Plus / Plus
Query: 46 cttttatctctcaattggaatggttttaccagcggccttgggtgttggctgtggtatgag 105
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 8233 cttttatctctcaattggaatggctttaccagcggccttgggtgttggctgtggtatgag 8292
Query: 106 agactatccaagatcccatattgtagatcaagcacttgttcctaaagattacattcctag 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8293 agactatccaagatcccatattgtagatcaagcacttgttcctaaagattacattcctag 8352
Query: 166 actaattttatgtgaaggagatggtgctgcccaaatgactatccaagaatttgc-tcana 224
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct: 8353 actaatcttatgtgaaggagatggtgctgcccaaatgactatccaagaatttgcatcata 8412
Query: 225 cattcgttataagatcccaatggaaatacttgtatggaacaataacggttatactgttga 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8413 cattcgttataagatcccaatggaaatacttgtatggaacaataacggttatactgttga 8472
Query: 285 gagagctataaatggccctactaggagttacaatgacattgctcctttcaaatggacagc 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8473 gagagctataaatggccctactaggagttacaatgacattgctcctttcaaatggacagc 8532
Query: 345 attattgaacgtctttggcgacttcgaaaataaattcaacgagtctgttaccgtcgagaa 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8533 attattgaacgtctttggcgacttcgaaaataaattcaacgagtctgttaccgtcgagaa 8592
Query: 405 aaacgatgagttagttcaacttctcaataaatggaaatcttgtaaggaaagggcaaacat 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8593 aaacgatgagttagttcaacttctcaataaatggaaatcttgtaaggaaagggcaaacat 8652
Query: 465 caaattagctgaagttatgcttccagtaatggatataccacaagaattgaatgcaatgct 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8653 caaattagctgaagttatgcttccagtaatggatataccacaagaattgaatgcaatgct 8712
Query: 525 agtcaatggaaaaccaaattgaagtcaagccaacatgtcagtttataactttttccttct 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8713 agtcaatggaaaaccaaattgaagtcaagccaacatgtcagtttataactttttccttct 8772
Query: 585 ttccatggcaagaagtgataatgtaattgtctataaatttgaatgttgaagaatgtgaaa 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8773 ttccatggcaagaagtgataatgtaattgtctataaatttgaatgttgaagaatgtgaaa 8832
Query: 645 acggtaaatagtttaagtcttattctttaaatgagggcgtaattcttgattaaaccagtg 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8833 acggtaaatagtttaagtcttattctttaaatgagggcgtaattcttgattaaaccagtg 8892
Query: 705 atttgaggtcagacataagttataacttgaattgccttactgaatagaggcatatcgtaa 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8893 atttgaggtcagacataagttataacttgaattgccttactgaatagaggcatatcgtaa 8952
Query: 765 tatttttaattttataggcctttttgggaatgcgagtccaatttaaagttatatgttgct 824
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8953 tatttttatttttataggcctttttgggaatgcgagtccaatttaaagttatatgttgct 9012
Query: 825 aaattgtttagaggaaatatcaaacttcgcttaactctctagttaatgttgagggagtag 884
||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||
Sbjct: 9013 aaattgtttagaggaaatatcaaacttcgctaaactctctagtaaatgttga-ggagtag 9071
Query: 885 ac-tttcgtcatggatctttgggnagctagtgtcattat 922
|| |||||||||||||||||||| |||||||||||||||
Sbjct: 9072 acttttcgtcatggatctttggggagctagtgtcattat 9110
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7346
Number of Sequences: 1807
Number of extensions: 7346
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)