BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZH03RM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1606 892 0.0
3x_Contig871 186 5e-47
>3x_Contig1606
Length = 11468
Score = 892 bits (450), Expect = 0.0
Identities = 463/466 (99%), Gaps = 1/466 (0%)
Strand = Plus / Plus
Query: 439 ttagtccatgaatctccagagggactatgtggcttgtattgaatttgacccatcttcgac 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttagtccatgaatctccagagggactatgtggcttgtattgaatttgacccatcttcgac 60
Query: 499 tggcccaatagtataccttcatcggtcagtgaacaaaggtcatatttgaataaatcgtcg 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tggcccaatagtataccttcatcggtcagtgaacaaaggtcatatttgaataaatcgtcg 120
Query: 559 aaatgatactcacggaatcgactaacatcgaaaaaagagaccgttatagaattgctaccg 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaatgatactcacggaatcgactaacatcgaaaaaagagaccgttatagaattgctaccg 180
Query: 619 ccttcatttcttgttgtccatacatgacctagttggtttatagtaaggtatcttttatcg 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ccttcatttcttgttgtccatacatgacctagttggtttatagtaaggtatcttttatcg 240
Query: 679 ctattcccgaaaggtgtcgcgcctgttgaaaatggtcggtattggaattgagctggtggt 738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctattcccgaaaggtgtcgcgcctgttgaaaatggtcggtattggaattgagctggtggt 300
Query: 739 tggtaaattctgcgatgatttacatgattagctgtcaaagaaagaattgattgaacatga 798
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 301 tggtaaattctgcgatgatttacatgattagctgtcaaagaaggaattgattgaacatga 360
Query: 799 gttttttggtctcttatattgtgcggcctcgccattatcatcctcaataaaatcatcttc 858
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 g-tttttggtctcttatattgtgcggcctcgccattatcatcctcaataaaatcatcttc 419
Query: 859 attctcgaaaatgtatgtacgcttaggttcatgttgatccatttct 904
|||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 420 attctcgaaattgtatgtacgcttaggttcatgttgatccatttct 465
>3x_Contig871
Length = 4172
Score = 186 bits (94), Expect = 5e-47
Identities = 94/94 (100%)
Strand = Plus / Plus
Query: 50 agaagaataaggatttgatacctagggggttgaatgaattgaaaatatcatcgtatttta 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4079 agaagaataaggatttgatacctagggggttgaatgaattgaaaatatcatcgtatttta 4138
Query: 110 aaaattcaatgtcttcatcatcatttcccggctg 143
||||||||||||||||||||||||||||||||||
Sbjct: 4139 aaaattcaatgtcttcatcatcatttcccggctg 4172
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7744
Number of Sequences: 1807
Number of extensions: 7744
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 2
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)