BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZH04RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1648 1552 0.0
>3x_Contig1648
Length = 16375
Score = 1552 bits (783), Expect = 0.0
Identities = 859/875 (98%), Gaps = 7/875 (0%)
Strand = Plus / Plus
Query: 48 agcttttgaagtggctctagttaactaatagatctactnttcccagtaacaaagagaaaa 107
||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 8469 agcttttgaagtggctctagttaac-aatagatctact-ttcccagtaacaaagagaaaa 8526
Query: 108 gttgctgctgttccaaatttcacttcaatccaaattaaactgttgatcaaccctgcagaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8527 gttgctgctgttccaaatttcacttcaatccaaattaaactgttgatcaaccctgcagaa 8586
Query: 168 tgtgagaagcttgtgactaagggcccagagaacacagaagaattaactaatgaagttttt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 8587 tgtgagaagcttgtgactaagggcccagagaacacagaagaattaactaatgaagctaat 8646
Query: 228 taattcaagattttttggggtaaaaaagcatctcttcgtagattcaaggacggttccatt 287
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8647 gaattcaagattttttggggtaaaaaagcatctcttcgtagattcaaggacggttccatt 8706
Query: 288 gcaaactgctgtgtctggtcaacttctgctattgaaagtgttgtttcttcgattttgtcc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8707 gcaaactgctgtgtctggtcaacttctgctattgaaagtgttgtttcttcgattttgtcc 8766
Query: 348 tatgttctaaggctacatttgactgaagactgcaaactcatcaataattccactagccaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8767 tatgttctaaggctacatttgactgaagactgcaaactcatcaataattccactagccaa 8826
Query: 408 ttccaacagttgttaccactaccgaacctacctgcatcttcaaagacatcagttctaaac 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8827 ttccaacagttgttaccactaccgaacctacctgcatcttcaaagacatcagttctaaac 8886
Query: 468 ctatcaagctactataacttgaagaagtcctttgacgatttgtataaaatcatgttcgag 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8887 ctatcaagctactataacttgaagaagtcctttgacgatttgtataaaatcatgttcgag 8946
Query: 528 ctaaaactcccattatcaattaaatctcttttacctattggttctgcattcaggtacaca 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8947 ctaaaactcccattatcaattaaatctcttttacctattggttctgcattcaggtacaca 9006
Query: 588 tcattatgtcagcctgtcccatacgcatattctaatcctgatttcttacaagacgttgtt 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9007 tcattatgtcagcctgtcccatacgcatattctaatcctgatttcttacaagacgttgtt 9066
Query: 648 atcgaattcgaaacgtctacaaaatggcctgacgaaattacttcgttggaaaaggctaaa 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9067 atcgaattcgaaacgtctacaaaatggcctgacgaaattacttcgttggaaaaggctaaa 9126
Query: 708 gctgcatttttattgaagattcaagaatccatcacgcagactcatagtgagtacaagtgc 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9127 gctgcatttttattgaagattcaagaatccatcacgcagactcatagtgagtacaagtgc 9186
Query: 768 tactttacacgtgatgaatcgattccatacaacttgg-aataggtactctaaa-attttg 825
||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||
Sbjct: 9187 tactttacacgtgatgaatcgattccatacaacttggaaatagttactctaaacattttg 9246
Query: 826 acttcagaa-gatacggtttcaagtttagagtt-taactgagagagacg-agttatgtat 882
||| ||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 9247 actccagaaggatacggtttcaagtttagagttctaactgagagagacgaagttatgtat 9306
Query: 883 ttgaaagcaattaacaacgccagaaaaggactaag 917
|||| ||||||||||||||| ||||||| ||||||
Sbjct: 9307 ttgagagcaattaacaacgcaagaaaagaactaag 9341
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7096
Number of Sequences: 1807
Number of extensions: 7096
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)