BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZH05FM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig908 1457 0.0
>3x_Contig908
Length = 2758
Score = 1457 bits (735), Expect = 0.0
Identities = 803/824 (97%), Gaps = 13/824 (1%)
Strand = Plus / Minus
Query: 87 gtataatggttttgaatccagccatgaacccccaaagtgctcctttccattgatagaatg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1146 gtataatggttttgaatccagccatgaacccccaaagtgctcctttccattgatagaatg 1087
Query: 147 atctggggagcccaataaatctagaatcctccatatttgatcggtttcgtcagaaccggg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1086 atctggggagcccaataaatctagaatcctccatatttgatcggtttcgtcagaaccggg 1027
Query: 207 aaatagtggtgaaaaggtggctagttcgacaacaacacaaccatacgcccaaatatccaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1026 aaatagtggtgaaaaggtggctagttcgacaacaacacaaccatacgcccaaatatccaa 967
Query: 267 cggtttggaatagtatccttttctaagaagaatttctggtgacctataccaacgggtcga 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 cggtttggaatagtatccttttctaagaagaatttctggtgacctataccaacgggtcga 907
Query: 327 cacataggtggtataaggtgatctgttattcacatgtcttgccaaaccgtaatcagccaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 906 cacataggtggtataaggtgatctgttattcacatgtcttgccaaaccgtaatcagccaa 847
Query: 387 tttcaccacgtaattatccgaataattatcatcttccaaccatttcttgctgaagtacct 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 tttcaccacgtaattatccgaataattatcatcttccaaccatttcttgctgaagtacct 787
Query: 447 atgagatggcgatatcaagatattctccggtttgatatctctatggaaaaaatcgtgatc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 atgagatggcgatatcaagatattctccggtttgatatctctatggaaaaaatcgtgatc 727
Query: 507 atgaatatgtttaattcctgctaatatttggaataatatcgacctcaaagtaggtaggga 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 atgaatatgtttaattcctgctaatatttggaataatatcgacctcaaagtaggtaggga 667
Query: 567 aaacactcttcttttcctatgtttcatcaattgataaatgttctgctccatgcattccat 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 aaacactcttcttttcctatgtttcatcaattgataaatgttctgctccatgcattccat 607
Query: 627 tacaatgtgaaggtgatacaaagaatcatcaatgaacatctcgtatatggtaaccaaatn 686
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tacaatgtgaaggtgatacaaagaatcatcaatgaacatctcgtatatggtaaccaaatt 547
Query: 687 tttgtgtgcaggaatttgcaatatgaatttgatctctctgactcttgtatagtcatgcaa 746
||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ttt----------atttgcaatatgaatttgatctctctgactcttgtatagtcatgcaa 497
Query: 747 tgttggtaatctattcatcattgttttgattgccactatacccttttttcttatagtacc 806
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 496 tgttggtaatctattcatcattgttttgattgccactataccc-tttttcttatagtacc 438
Query: 807 aggttttcttgttcgacgtttctgtatagaagttgatccatcaaagtttcttggtacatt 866
| |||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||
Sbjct: 437 a-gttttcttgttcgacgtttctgataagagtttgatccatcaaagtttctgggtacatt 379
Query: 867 gaggaaattttgggtggctgaactgntcatatcgtacattgtct 910
||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct: 378 gaggaaa-tttgggtggctgaactgttcatatcgtacattgtct 336
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6900
Number of Sequences: 1807
Number of extensions: 6900
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)