BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZH05RM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1268 1620 0.0
>3x_Contig1268
Length = 6710
Score = 1620 bits (817), Expect = 0.0
Identities = 885/901 (98%), Gaps = 5/901 (0%)
Strand = Plus / Plus
Query: 45 gcttcttgcgtggaaatgtaacggtagacaatatacagaagtcatggctccatttatgta 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1824 gcttcttgcgtggaaatgtaacggtagacaatatacagaagtcatggctccatttatgta 1883
Query: 105 actgcgatggagacatattcttctgattttcgaaatgtatcggtatggggggggggcttt 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1884 actgcgatggagacatattcttctgattttcgaaatgtatcggtatggggggggggcttt 1943
Query: 165 cttcagtacaaagatttctaataacagataagtgagtccctatgtttcagatgtttttat 224
||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct: 1944 cttcagtacaaagatttctaataacagataagtgagtccctatgtttcagatgctctcag 2003
Query: 225 tacaacccaattctcaatttcaatggtatctgatgcagagaagtatacacgagatactaa 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2004 tacaacccaattctcaatttcaatggtatctgatgcagagaagtatacacgagatactaa 2063
Query: 285 atgccgataccctttatatatacacgggcatatactaccatcgtcaaagtttatgtgatt 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2064 atgccgataccctttatatatacacgggcatatactaccatcgtcaaagtttatgtgatt 2123
Query: 345 cattggaaaaccttatgagatgagcgaaaatgccacaatttttctagtgtgagatatcac 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2124 cattggaaaaccttatgagatgagcgaaaatgccacaatttttctagtgtgagatatcac 2183
Query: 405 gtttttccatgaacaaacataaccagagaaacaatgaataggggtgaataaggagcaatt 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2184 gtttttccatgaacaaacataaccagagaaacaatgaataggggtgaataaggagcaatt 2243
Query: 465 gggactggagcattcagggcatcttttaattgtttgagtacatgctggtgttggcagtgg 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2244 gggactggagcattcagggcatcttttaattgtttgagtacatgctggtgttggcagtgg 2303
Query: 525 atatttatcagaagaaaactgtatgatttaacgacttttttttttggatattacgtgctg 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2304 atatttatcagaagaaaactgtatgatttaacgacttttttttttggatattacgtgctg 2363
Query: 585 tacttcaggacgatttctcaaattatgctaccttggccaccgacagaaggaggatgctcc 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2364 tacttcaggacgatttctcaaattatgctaccttggccaccgacagaaggaggatgctcc 2423
Query: 645 tcgtcagcgtaattgtatgatccggatcttcaatgcttgcaattaaaattgagctgtaaa 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2424 tcgtcagcgtaattgtatgatccggatcttcaatgcttgcaattaaaattgagctgtaaa 2483
Query: 705 cccaatgactgtgttcttcataggttcaaatcttattcgcttcaagcataccaatagttt 764
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 2484 cccaatgactgtgttcttcataggttcaaatcttattcgcttcaagcata-caatagttt 2542
Query: 765 ttatgtgacccatttaatgatactatcatgaggattataaaa-ttatataatttcattca 823
|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 2543 ttatgtgaccattttaatgatactatcatgaggattataaaatttatataatttcattca 2602
Query: 824 acttatacgtattttatcatactaatataggaatactggttaatgggtaaaactgtcacc 883
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 2603 acttatacgtattttatcatactaatataggaatactgtttaat-ggtaaaactgtcacc 2661
Query: 884 ttttaagtattccactccagtttattg-ttgcagccagaatctaaactatttgacagtag 942
|||||||||| ||||||||| |||||| ||||||||||| || || ||||||||||||||
Sbjct: 2662 ttttaagtatcccactccag-ttattgtttgcagccagattcgaagctatttgacagtag 2720
Query: 943 a 943
|
Sbjct: 2721 a 2721
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8363
Number of Sequences: 1807
Number of extensions: 8363
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)