BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZH06RM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1571 1243 0.0
3x_Contig1119 272 1e-72
>3x_Contig1571
Length = 13536
Score = 1243 bits (627), Expect = 0.0
Identities = 636/639 (99%)
Strand = Plus / Minus
Query: 44 gcttatctaaaacttgcttaccacctggcttaatcacgttagtgagctctaagagtctgt 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 gcttatctaaaacttgcttaccacctggcttaatcacgttagtgagctctaagagtctgt 580
Query: 104 cactgagtgtagatttaccatgatcaacatgagccactatagaaaagttacgatatcttt 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 cactgagtgtagatttaccatgatcaacatgagccactatagaaaagttacgatatcttt 520
Query: 164 caattggaatggcatcgatcctctcttgtaatgaatgattacttctaacttgttgtttgg 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 519 caattggaatggcatcgatcctctcttgtaatgaatgattacttctaacttgttgaaagg 460
Query: 224 catacctcacatgtcgaagcaacctcctattgaacataattatcgggtctgaaatttaga 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 catacctcacatgtcgaagcaacctcctattgaacataattatcgggtctgaaatttaga 400
Query: 284 actcgtagctctataagcctttctctttcgtctatcgtttaacgtctagaatttatgttt 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 actcgtagctctataagcctttctctttcgtctatcgtttaacgtctagaatttatgttt 340
Query: 344 atagatcttccagtcattaaacattgttggcaacgaattgtttaaatttgatgtttatgg 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 atagatcttccagtcattaaacattgttggcaacgaattgtttaaatttgatgtttatgg 280
Query: 404 ccgttcagatctaaagttcaactttaactcatacatacaaagggaataacaaaaaaacgt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ccgttcagatctaaagttcaactttaactcatacatacaaagggaataacaaaaaaacgt 220
Query: 464 gatagcaagctaatcctcgggacgaattttgcaatgaaactaaaactaagtattcaagca 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 gatagcaagctaatcctcgggacgaattttgcaatgaaactaaaactaagtattcaagca 160
Query: 524 ggtactgaggactactcattgttcaggacaacgttgataacggtgtccaaactacgaaaa 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 ggtactgaggactactcattgttcaggacaacgttgataacggtgtccaaactacgaaaa 100
Query: 584 acatgtattttaagatttacctcttctaggctggtcattatatcaacaccaaacagtaca 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 acatgtattttaagatttacctcttctaggctggtcattatatcaacaccaaacagtaca 40
Query: 644 ggaacggtcatagatcagggtcaagtttggtgcacagtc 682
|||||||||||||||||||||||||||||||||||||||
Sbjct: 39 ggaacggtcatagatcagggtcaagtttggtgcacagtc 1
>3x_Contig1119
Length = 5045
Score = 272 bits (137), Expect = 1e-72
Identities = 166/175 (94%), Gaps = 1/175 (0%)
Strand = Plus / Plus
Query: 766 tgtcggcgtgctgcggaaattcgataaatgcaacgcaactcaattgaccatcaaattggt 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtcggcgtgctgcggaaattcgataaatgcaacgcaactcaattgaccatcaaattggt 60
Query: 826 aagattggttactgttgacaaggaaagtgaagcagctgcagctgctcccaatacagacca 885
||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct: 61 aagattggtaactgttgacaaggaaagtgaagcagctgcagctgctcacaatacagacaa 120
Query: 886 tacactctgccggattaagcttttcattttcagatacacnanatgaaagtacgat 940
||||||||| ||||||||||||||||||| |||||||| | ||||||| |||||
Sbjct: 121 tacactctg-cggattaagcttttcatttcaagatacacgagatgaaaggacgat 174
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6392
Number of Sequences: 1807
Number of extensions: 6392
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 2
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)