BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZH09FM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1092 1530 0.0
3x_Contig178 833 0.0
3x_Contig1750 325 9e-89
3x_Contig1797 301 1e-81
>3x_Contig1092
Length = 2520
Score = 1530 bits (772), Expect = 0.0
Identities = 837/855 (97%), Gaps = 3/855 (0%)
Strand = Plus / Plus
Query: 89 taatagcgttatgttagagctccctgcaagtatgaaatatggtccacaagtctggtgcgt 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 taatagcgttatgttagagctccctgcaagtatgaaatatggtccacaagtctggtgcgt 293
Query: 149 actgttaagatctgtatttggtgcagaagcattgtaaattggtggagatatatccatcga 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 actgttaagatctgtatttggtgcagaagcattgtaaattggtggagatatatccatcga 353
Query: 209 ctcagggagccaatcatcactcggatgtctgctaccccagctgcggccacagcgtatggc 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ctcagggagccaatcatcactcggatgtctgctaccccagctgcggccacagcgtatggc 413
Query: 269 atcacctaatgtagtgcttgaatcgattggtagcacatactgttcagtgcaaaataatgt 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 atcacctaatgtagtgcttgaatcgattggtagcacatactgttcagtgcaaaataatgt 473
Query: 329 tggtccaccaacttctagtgacattgttgactactttctgtgatttaacacaacttgttg 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tggtccaccaacttctagtgacattgttgactactttctgtgatttaacacaacttgttg 533
Query: 389 gacagcatgatattatgaaggatatatgatcaaattgtaccattatcgagcacttgtgat 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gacagcatgatattatgaaggatatatgatcaaattgtaccattatcgagcacttgtgat 593
Query: 449 aaataaatacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgttgca 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 aaataaatacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgttgca 653
Query: 509 tctattgaacagagataagcagaggcgtaacgagaaaattaatcttcaatgggacttagt 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tctattgaacagagataagcagaggcgtaacgagaaaattaatcttcaatgggacttagt 713
Query: 569 caaaactgtatcagttgtagattgagagtgaattgaatatggttacgggatctaatgagt 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 caaaactgtatcagttgtagattgagagtgaattgaatatggttacgggatctaatgagt 773
Query: 629 cacgtgatactacttggacaaaggccacctagccacaactcacttcacaatattctataa 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 cacgtgatactacttggacaaaggccacctagccacaactcacttcacaatattctataa 833
Query: 689 ggatccaattggttgtattgatgttcctgaacgaaattatatatgtaacgggattgtttc 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 ggatccaattggttgtattgatgttcctgaacgaaattatatatgtaacgggattgtttc 893
Query: 749 acgcatagtgaagcaatcaaagctcaagatattgagggaagtttcccctacaaaatataa 808
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 894 acgcatagtgaagcaatcaaagctcaagaaattga-ggaagtttcccctacaaaatataa 952
Query: 809 catctacttattatcttgtcaaaatatataatacaggaatgaatgcttaaaaagagtttg 868
|||||||||||||||| | |||||||| |||||| ||||||||||| ||||||||| ||
Sbjct: 953 catctacttattatctagcaaaaatataaaatacaagaatgaatgctaaaaaagagtctg 1012
Query: 869 tcaattcaaaattttgtccaacatttcctcttacatggcttgnactgtgaact-tgtact 927
|| ||||||||| | |||||||| | |||| ||||||||||| |||||||||| || |||
Sbjct: 1013 tc-attcaaaatctagtccaacaatccctcgtacatggcttgaactgtgaactatgaact 1071
Query: 928 gaatattcctttcat 942
|||||||||||||||
Sbjct: 1072 gaatattcctttcat 1086
>3x_Contig178
Length = 1315
Score = 833 bits (420), Expect = 0.0
Identities = 479/496 (96%), Gaps = 2/496 (0%)
Strand = Plus / Minus
Query: 89 taatagcgttatgttagagctccctgcaagtatgaaatatggtccacaagtctggtgcgt 148
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 856 taatagcgttatgttagagctccctgcaagtatgaaatatggtccacaagtccggtgcgt 797
Query: 149 actgttaagatctgtatttggtgcagaagcattgtaaattggtggagatatatccatcga 208
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 796 actgttaagatctgtatttggcgcagaagcattgtaaattggtggagatatatccatcga 737
Query: 209 ctcagggagccaatcatcactcggatgtctgctaccccagctgcggccacagcgtatggc 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ctcagggagccaatcatcactcggatgtctgctaccccagctgcggccacagcgtatggc 677
Query: 269 atcacctaatgtagtgcttgaatcgattggtagcacatactgttcagtgcaaaataatgt 328
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 676 atcacctaatgtagtgcttgaatctattggtagcacatactgttcagtgcaaaataatgt 617
Query: 329 tggtccaccaacttctagtgacattgttgactactttctgtgatttaacacaacttgttg 388
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 616 tggtccaccaacttccagtgacattgttgactactttctgtgatttaacacaagttgttg 557
Query: 389 gacagcatgatattatgaaggatatatgatcaaattgtaccattatcgagcacttgtgat 448
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gacagcataatattatgaaggatatatgatcaaattgtaccattatcgagcacttgtgat 497
Query: 449 aaataaatacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgttgca 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aaataaatacacggaccctgaatttgaaaaagaaaaatctttgataaatatggtgttgca 437
Query: 509 tctattg-aacagagataagcagag-gcgtaacgagaaaattaatcttcaatgggactta 566
||||||| |||| | ||||||| || | |||| | ||||||||||||||||| |||||
Sbjct: 436 tctattgcaacacacataagcacagcacctaaccacaaaattaatcttcaatgccactta 377
Query: 567 gtcaaaactgtatcag 582
||||||||||||||||
Sbjct: 376 gtcaaaactgtatcag 361
>3x_Contig1750
Length = 14427
Score = 325 bits (164), Expect = 9e-89
Identities = 247/272 (90%), Gaps = 2/272 (0%)
Strand = Plus / Plus
Query: 582 gttgtagattgagagtgaattgaatatggttacgggatctaatgagtcacgtgatactac 641
|||||| |||||||||||||||| |||||| ||||||| ||||| |||||||||||||||
Sbjct: 13515 gttgtaaattgagagtgaattgattatggtcacgggatttaatgggtcacgtgatactac 13574
Query: 642 ttggacaaaggccacctagccacaactcacttcacaatattctataaggatccaattggt 701
||| | ||||||| | |||||||||||||||||| ||||||||| || | ||||||||||
Sbjct: 13575 ttgaataaaggccgcatagccacaactcacttcagaatattctagaatgctccaattggt 13634
Query: 702 tgtattgatgttcctgaacgaaattatatatgtaacgggattgtttcacgcatagtgaag 761
|||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 13635 tgtattgatgttgctgaacgaaattatataagtagcgggattgtttcacgcatagtgaag 13694
Query: 762 caatcaaagctcaagatattgagggaagttt-cccctacaaaatataacatctacttatt 820
|||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 13695 caatcaaagctcaagaaattga-ggaagtttacccctacaaaatataacatctacttatt 13753
Query: 821 atcttgtcaaaatatataatacaggaatgaat 852
|||| |||||||| |||||| ||||||||
Sbjct: 13754 atctaacaaaaatataaaatacaagaatgaat 13785
>3x_Contig1797
Length = 34782
Score = 301 bits (152), Expect = 1e-81
Identities = 254/284 (89%), Gaps = 3/284 (1%)
Strand = Plus / Minus
Query: 582 gttgtagattgagagtgaattgaatatggttacgggatctaatgagtcacgtgatactac 641
|||||| ||||||||||||||||||| ||| |||||||||||||||||||||||| ||||
Sbjct: 32556 gttgtaaattgagagtgaattgaatacggtcacgggatctaatgagtcacgtgatgctac 32497
Query: 642 ttggacaaaggccacctagccacaactcacttcacaatattctataaggatccaattggt 701
||| | ||||||||| |||||||| ||||||||| ||||||||| || | ||||||||||
Sbjct: 32496 ttgaataaaggccacgtagccacagctcacttcagaatattctagaatgctccaattggt 32437
Query: 702 tgtattgatgttcctgaacgaaattatatatgtaacgggattgtttcacgcatagtgaag 761
|||||||||||| |||||||||| |||||| ||||||||||||||||||| |||||||||
Sbjct: 32436 tgtattgatgttactgaacgaaactatataagtaacgggattgtttcacgaatagtgaag 32377
Query: 762 caatcaaagctc-aagatattgagggaagttt-cccctacaaaatataacatctacttat 819
|||||||||||| |||| ||||| |||||||| || |||||||||||||||||||||||
Sbjct: 32376 caatcaaagctcaaagaaattga-ggaagtttacctgtacaaaatataacatctacttat 32318
Query: 820 tatcttgtcaaaatatataatacaggaatgaatgcttaaaaaga 863
||||| |||||||| |||||| |||||||| || |||||||
Sbjct: 32317 tatctaacaaaaatataaaatacaagaatgaatactaaaaaaga 32274
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7007
Number of Sequences: 1807
Number of extensions: 7007
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 4
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)