BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZH09RM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1672 1604 0.0
>3x_Contig1672
Length = 13609
Score = 1604 bits (809), Expect = 0.0
Identities = 881/899 (97%), Gaps = 5/899 (0%)
Strand = Plus / Minus
Query: 44 gcttggttgaacgcagagttcttgtcttcgaattgctccttgtctttgccgcttaagaag 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10395 gcttggttgaacgcagagttcttgtcttcgaattgctccttgtctttgccgcttaagaag 10336
Query: 104 tctgctgacaaagagtgctcatcgaaaccgtacttaccagtctctgaaacaaagtcgacg 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10335 tctgctgacaaagagtgctcatcgaaaccgtacttaccagtctctgaaacaaagtcgacg 10276
Query: 164 tcgtaaccttgttccttgtaataattgaaaggatgtagcgcttccacagcaaatat-cct 222
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 10275 tcgtaaccttgttccttgtaataattgaaaggatgtagcgcttccacagcaaagacaccg 10216
Query: 223 gtcttcgcaccatcagtaaagaatgcttcgttgtaacttgtcaatgcaattaaaaccctg 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10215 gtcttcgcaccatcagtaaagaatgcttcgttgtaacttgtcaatgcaattaaaaccctg 10156
Query: 283 gtcattttcagacggaattattatatgagttaatgactcttgtcaacctacgaagcacac 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10155 gtcattttcagacggaattattatatgagttaatgactcttgtcaacctacgaagcacac 10096
Query: 343 tcaacggagagagataataatgttcaggatcttgaatgtcaggttctttttagtattcta 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10095 tcaacggagagagataataatgttcaggatcttgaatgtcaggttctttttagtattcta 10036
Query: 403 ttcattgttatattcttttatttttgttagataatacgtagatgtttcatattgaagtag 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10035 ttcattgttatattcttttatttttgttagataatacgtagatgtttcatattgaagtag 9976
Query: 463 tgaacttcctcaattccatgttattcatttgtgatactaactaatagctttggcaaggac 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9975 tgaacttcctcaattccatgttattcatttgtgatactaactaatagctttggcaaggac 9916
Query: 523 tagcccaaataatctggcctcgacattagctgtctcatcccatacgattaatcttacatc 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9915 tagcccaaataatctggcctcgacattagctgtctcatcccatacgattaatcttacatc 9856
Query: 583 ggcccaccaactaccagcatcatgaaacctagtacaataaggtgccatgttatggtcagc 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9855 ggcccaccaactaccagcatcatgaaacctagtacaataaggtgccatgttatggtcagc 9796
Query: 643 cgtatctattaaccaattagaaataagggccttgatggaatcaatcgaaacctgtgtatc 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9795 cgtatctattaaccaattagaaataagggccttgatggaatcaatcgaaacctgtgtatc 9736
Query: 703 acaattctttccagatgtganaggcgcaattcccaccatatatgttaatctatcttcacc 762
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 9735 acaattctttccagatgtgaaaggcgcaattcccaccatatatgttaatctatcttcacc 9676
Query: 763 aagtgcatcaagtttcaaccagtaagaaaagccattgcaacttgtcttgtttgagccacg 822
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 9675 aagtgcatcaaggttcaaccagtaagaaaagccattgcaacttgtcttggttgagccacg 9616
Query: 823 ctttaagtgcgccagctatatagttaccaactgtcgccatgtttccgncctaattt-atg 881
| ||||||||||||||||||||||||| ||||||||||||| ||||| |||||||| |||
Sbjct: 9615 c-ttaagtgcgccagctatatagttacaaactgtcgccatg-ttccgccctaatttaatg 9558
Query: 882 aggctagttgtatttatcc-aaagtgtttctttaaccatgcctttaaattaactcttct 939
| ||||||||||||||||| |||||||| |||||||||||||||||||| |||||||
Sbjct: 9557 aagctagttgtatttatccaaaagtgttctcttaaccatgcctttaaattacctcttct 9499
Score = 446 bits (225), Expect = e-125
Identities = 295/317 (93%), Gaps = 1/317 (0%)
Strand = Plus / Minus
Query: 44 gcttggttgaacgcagagttcttgtcttcgaattgctccttgtctttgccgcttaagaag 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12178 gcttggttgaacgcagagttcttgtcttcgaattgctccttgtctttgccgcttaagaag 12119
Query: 104 tctgctgacaaagagtgctcatcgaaaccgtacttaccagtctctgaaacaaagtcgacg 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12118 tctgctgacaaagagtgctcatcgaaaccgtacttaccagtctctgaaacaaagtcgacg 12059
Query: 164 tcgtaaccttgttccttgtaataattgaaaggatgtagcgcttccacagcaaata-tcct 222
|| ||||||||||||||||||||||||||||| ||||||||||||||| |||| | ||
Sbjct: 12058 tcataaccttgttccttgtaataattgaaagggtgtagcgcttccacaacaaagacaccg 11999
Query: 223 gtcttcgcaccatcagtaaagaatgcttcgttgtaacttgtcaatgcaattaaaaccctg 282
||||||| |||||||| | || | |||||||||| ||| |||||||||| |||| ||
Sbjct: 11998 gtcttcgtaccatcagcgtaaaacgtatcgttgtaacatgttaatgcaattagaaccttg 11939
Query: 283 gtcattttcagacggaattattatatgagttaatgactcttgtcaacctacgaagcacac 342
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11938 gtcattttcagacagaattattatatgagttaatgactcttgtcaacctacgaagcacac 11879
Query: 343 tcaacggagagagataa 359
||||||| || ||||||
Sbjct: 11878 tcaacggggaaagataa 11862
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6324
Number of Sequences: 1807
Number of extensions: 6324
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)