BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC13ZH10RM1.SCF screened BAC_end
         (922 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1656                                                        1606   0.0  

>3x_Contig1656 
          Length = 14482

 Score = 1606 bits (810), Expect = 0.0
 Identities = 853/865 (98%), Gaps = 2/865 (0%)
 Strand = Plus / Minus

                                                                        
Query: 52   gcttttaagaaatcgcctgcagcttattgaattgaagaatcgtgttcaattgataaataa 111
            |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 2231 gcttttaagaaatcgcctgcagcagattgaattgaagaatcgtgttcaattgataaataa 2172

                                                                        
Query: 112  tctaacaatttagatatcaaatgttgtttcttcaataatgcgattattccagttggagca 171
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2171 tctaacaatttagatatcaaatgttgtttcttcaataatgcgattattccagttggagca 2112

                                                                        
Query: 172  tctggtttatccgtagaaatgactttaagaaggaaatccatcaatggagggttattgttg 231
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 2111 tctggtttatccgtagaaatgactttaagaaggaaatccatcaatggagggttatcgatg 2052

                                                                        
Query: 232  tgtgcaataaatctatcaactatattctcttgttttaaaatgaagtttatcatgccacta 291
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2051 tgtgcaataaatctatcaactatattctcttgttttaaaatgaagtttatcatgccacta 1992

                                                                        
Query: 292  atgtccatatctaataaacgttcattgattttcatgaaatatgtggatgcaatgattgaa 351
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1991 atgtccatatctaataaacgttcattgattttcatgaaatatgtggatgcaatgattgaa 1932

                                                                        
Query: 352  agtggagcagggtgttccaaagtggaccataacttgactagaaggtcttcgttatccatg 411
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1931 agtggagcagggtgttccaaagtggaccataacttgactagaaggtcttcgttatccatg 1872

                                                                        
Query: 412  aatgcagaggaaatggtccacacatccgcagagagaatctctgcagcgatcctggctctt 471
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1871 aatgcagaggaaatggtccacacatccgcagagagaatctctgcagcgatcctggctctt 1812

                                                                        
Query: 472  cttgactctacctgttcttcactttctggtggtagagtgatactcgtttcagctgaagac 531
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1811 cttgactctacctgttcttcactttctggtggtagagtgatactcgtttcagctgaagac 1752

                                                                        
Query: 532  tcagatgcattatctggaacgacgtccagtgtattttggtattgtgattgagtattattt 591
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1751 tcagatgcattatctggaacgacgtccagtgtattttggtattgtgattgagtattattt 1692

                                                                        
Query: 592  tcatcttctgaattctctaagtcatcccctgaatccgcttctgcctctggagaaccttgt 651
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1691 tcatcttctgaattctctaagtcatcccctgaatccgcttctgcctctggagaaccttgt 1632

                                                                        
Query: 652  ttaccctgatcttcctctgcatcgttatcggatgaatccgacccattttccccttcttgt 711
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1631 ttaccctgatcttcctctgcatcgttatcggatgaatccgacccattttccccttcttgt 1572

                                                                        
Query: 712  tgttcctcatcgaccatgctatcgtcagctggttctaatacgtgttcgttggtcacataa 771
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1571 tgttcctcatcgaccatgctatcgtcagctggttctaatacgtgttcgttggtcacataa 1512

                                                                        
Query: 772  tcaaccaaccttgctaacacttcaggataccntgaaaacaccaatagttttgaaattcga 831
            |||||||||||||||||||||||||||||||   ||||||||||||| ||||||||||||
Sbjct: 1511 tcaaccaaccttgctaacacttcaggatacctgaaaaacaccaatag-tttgaaattcga 1453

                                                                        
Query: 832  gcacataagctctgtatacagttcctcgtcatccaacaagtcgttctaaatatcaaggtt 891
            ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||
Sbjct: 1452 gcacataagctctgtatacagttcctcgtcatccaacaagtcgtctaaaatatcaaggtt 1393

                                     
Query: 892  gggacgatagtcctttgtattcgaa 916
            ||||||||||||| |||||||||||
Sbjct: 1392 gggacgatagtcc-ttgtattcgaa 1369


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7119
Number of Sequences: 1807
Number of extensions: 7119
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)