BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZH11FM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1261 1602 0.0
>3x_Contig1261
Length = 9103
Score = 1602 bits (808), Expect = 0.0
Identities = 832/839 (99%), Gaps = 1/839 (0%)
Strand = Plus / Minus
Query: 86 ctttgattttctgattcgttcttctgaaattggatacgtgtttgtgactacaaccttatg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4021 ctttgattttctgattcgttcttctgaaattggatacgtgtttgtgactacaaccttatg 3962
Query: 146 aatatcgtctgacatttcaagctgttctagacagtcacctgtaaagataccatgagtagc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3961 aatatcgtctgacatttcaagctgttctagacagtcacctgtaaagataccatgagtagc 3902
Query: 206 gataacgtagacttctttagccccacaatttttgaccatgtgttcagcagcagagatgaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3901 gataacgtagacttctttagccccacaatttttgaccatgtgttcagcagcagagatgaa 3842
Query: 266 ggaacctggtctatcgatcatatcatccaagataatagcggtgcggccctgaacgttacc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3841 ggaacctggtctatcgatcatatcatccaagataatagcggtgcggccctgaacgttacc 3782
Query: 326 aaccaaagtgatcaatttttccggttgctcatcatcttcttcgtcatcttccgaatcaac 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3781 aaccaaagtgatcaatttttccggttgctcatcatcttcttcgtcatcttccgaatcaac 3722
Query: 386 agcatcaaaggaaccaatggttccgatagaaccctcgccatcggactgtatagcgtcagc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3721 agcatcaaaggaaccaatggttccgatagaaccctcgccatcggactgtatagcgtcagc 3662
Query: 446 atcatcaacgtattcgtcgtcaacgacgtggcccttgataacacgagcagtttgaatacc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3661 atcatcaacgtattcgtcgtcaacgacgtggcccttgataacacgagcagtttgaatacc 3602
Query: 506 gttcgtcaagatgatattctcctcctcattctcaaagtccccgggtctgatgattggttt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3601 gttcgtcaagatgatattctcctcctcattctcaaagtccccgggtctgatgattggttt 3542
Query: 566 gtttttccttaacatagattgtttcctttgcttcaattgcaacttatccttgttctgaga 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3541 gtttttccttaacatagattgtttcctttgcttcaattgcaacttatccttgttctgaga 3482
Query: 626 gtagagatccttggaacgacgacgatccgtatggatcatagcgaagttaatcttcaaaga 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3481 gtagagatccttggaacgacgacgatccgtatggatcatagcgaagttaatcttcaaaga 3422
Query: 686 gtcagccaaagcagtgactctcttggtgccgcctgggttcttggacacaacaactgcttc 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3421 gtcagccaaagcagtgactctcttggtgccgcctgggttcttggacacaacaactgcttc 3362
Query: 746 tctgtagtcttcgacatgctctctgatccatttaccgaggcttgttccgccgtattagtt 805
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct: 3361 tctgtagtcttcgacatgctctctgatccatttaccgaggcttggtccgccgtataagtt 3302
Query: 806 atcgacaggtttggtgaagaacccttgcatttgagatgcatgcanatccatcgaaacgac 865
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 3301 atcgacaggtttggtgaagaacccttgcatttgagatgcatgcaaatccatcgaaacgac 3242
Query: 866 gggatcagcttctgccatgatcaacaagttggccaacattctttgcagtattggcacct 924
| |||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct: 3241 gtgatcagctcctgccatgatcaacaagttggccaacattc-ttgcagtaatggcacct 3184
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6025
Number of Sequences: 1807
Number of extensions: 6025
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)