BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZH11RM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1448 1584 0.0
>3x_Contig1448
Length = 10333
Score = 1584 bits (799), Expect = 0.0
Identities = 876/894 (97%), Gaps = 7/894 (0%)
Strand = Plus / Minus
Query: 44 gcttattgtggtggaacgtgatactaatgggatcgttgcctgtattcaagctttcttttc 103
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 9263 gcttattgtggtggaacgtgatacgaatgggatcgttgcctgtattcaagctttcttttc 9204
Query: 104 taatgggaagacagtctcgcaaacgggtgtcaaatgggccactgctgttatcgctggtat 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9203 taatgggaagacagtctcgcaaacgggtgtcaaatgggccactgctgttatcgctggtat 9144
Query: 164 cgggttgttgacttctgcattgctatccgccttcggtaactctaacgctgctt-atangt 222
||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct: 9143 cgggttgttgacttctgcattgctatccgccttcggtaactctaacgctgcttcacatgt 9084
Query: 223 ggctgccaatactatgtcgcttttcttgtatttccaatcggtgactgtgttcgccatgga 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9083 ggctgccaatactatgtcgcttttcttgtatttccaatcggtgactgtgttcgccatgga 9024
Query: 283 acatgttaacactgtgcctcctatcgccgctgcttggtccgaaaacttgatgtggtccat 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9023 acatgttaacactgtgcctcctatcgccgctgcttggtccgaaaacttgatgtggtccat 8964
Query: 343 gggattgatccgtgtcactttcatgcaaaaaattttcagatggtatgttcaagccactgg 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8963 gggattgatccgtgtcactttcatgcaaaaaattttcagatggtatgttcaagccactgg 8904
Query: 403 tggcactccgactctatacttaacctcaaagacaatttctgttttggttcaaagatccct 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8903 tggcactccgactctatacttaacctcaaagacaatttctgttttggttcaaagatccct 8844
Query: 463 agaatatctggaaagtacccgcatctataagcgtgcggcagaagtcttgtatggtaattc 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8843 agaatatctggaaagtacccgcatctataagcgtgcggcagaagtcttgtatggtaattc 8784
Query: 523 caacgttctaatcttcagaggtattaaacgtttaggttacagtgccaacatcgaaattac 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8783 caacgttctaatcttcagaggtattaaacgtttaggttacagtgccaacatcgaaattac 8724
Query: 583 ttctatcgttgctactgggttaacattctttatattatgtgggtatttcctatttgggtt 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8723 ttctatcgttgctactgggttaacattctttatattatgtgggtatttcctatttgggtt 8664
Query: 643 gatcatttgcgccaaatatgtcgtcgaactatgtatcagagccggatggttgaaaaactc 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8663 gatcatttgcgccaaatatgtcgtcgaactatgtatcagagccggatggttgaaaaactc 8604
Query: 703 gaggttcatcgatttcagaaagcattggaagatcatattgaagggtgctcttctgcgtta 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8603 gaggttcatcgatttcagaaagcattggaagatcatattgaagggtgctcttctgcgtta 8544
Query: 763 catttacattggtttcattcaaa-tactattttatgtttctgggaaattatncaaagaga 821
||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||
Sbjct: 8543 catttacattggtttcattcaaattactattttatgtttctgggaatttattcaaagaga 8484
Query: 822 ttcgccggctctcattgnatttgag-tgnctattcatcattatgggttatggtatccctg 880
||||||||||||||||| | ||||| || |||||||||||||||| ||||||||||| |
Sbjct: 8483 ttcgccggctctcattgta-ttgagttgtctattcatcattatggtttatggtatcctcg 8425
Query: 881 gttatgtgtcactcanaacaa-ttcttttgctaaac-atctatt-agttacaca 931
||||||||||||||| ||||| |||||||||||||| ||||||| |||||||||
Sbjct: 8424 gttatgtgtcactcagaacaatttcttttgctaaacgatctattcagttacaca 8371
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5616
Number of Sequences: 1807
Number of extensions: 5616
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)