BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC13ZH12RM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1770 1647 0.0
>3x_Contig1770
Length = 29267
Score = 1647 bits (831), Expect = 0.0
Identities = 885/899 (98%), Gaps = 3/899 (0%)
Strand = Plus / Plus
Query: 43 gctttctttaggtgcgactgcactttcgttgcaaggtgggtcacttttcggattattcca 102
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 21520 gctttctttaggtgcgactgcacttgcgttgcaaggtgggtcacttttcggattattcca 21579
Query: 103 cctcggcgtattgaagggattgttggataggaatcttttacccaatatcatcaacgggac 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21580 cctcggcgtattgaagggattgttggataggaatcttttacccaatatcatcaacgggac 21639
Query: 163 ctcgattgtcgcatgcgtctcaagcatggcatgttgtctcagcgatggagatttggtaga 222
|||||| | |||||||||| ||||||||||||||||||||||||||||||| |||| |||
Sbjct: 21640 ctcgatgggcgcatgcgtcgcaagcatggcatgttgtctcagcgatggagagttggaaga 21699
Query: 223 tctattgaccggaaacagacttgtatctacaattaaacgcgatacagcgttaatgaaaga 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21700 tctattgaccggaaacagacttgtatctacaattaaacgcgatacagcgttaatgaaaga 21759
Query: 283 atgtggatacggcaacattgatgagcatttcaacatcggaactttagtagaaaatgtggt 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21760 atgtggatacggcaacattgatgagcatttcaacatcggaactttagtagaaaatgtggt 21819
Query: 343 gcacaatggatactcaaaagacgtgtatctatttattaaattcattcaaaagtcggtcat 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21820 gcacaatggatactcaaaagacgtgtatctatttattaaattcattcaaaagtcggtcat 21879
Query: 403 cggagatctaacttttgaagaggcgttccaaaggactgggaaggtattaaacattgttgt 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21880 cggagatctaacttttgaagaggcgttccaaaggactgggaaggtattaaacattgttgt 21939
Query: 463 tcatcccacgaataagaatatatgtcctaatttgttgaactatgtgacgaccccgaacgt 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21940 tcatcccacgaataagaatatatgtcctaatttgttgaactatgtgacgaccccgaacgt 21999
Query: 523 tcttatatctagtgctattgattgtagtttcggaacaaacacaatcagtaagaatacttg 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22000 tcttatatctagtgctattgattgtagtttcggaacaaacacaatcagtaagaatacttg 22059
Query: 583 gctattgggtaaaaacatagaaaacaaaatagtggactatttggatagaaaagagcccca 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22060 gctattgggtaaaaacatagaaaacaaaatagtggactatttggatagaaaagagcccca 22119
Query: 643 ttaccaggagttgaaattttcggcaccacaatacgttcaggattcgagccaattggaggc 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22120 ttaccaggagttgaaattttcggcaccacaatacgttcaggattcgagccaattggaggc 22179
Query: 703 cccatataccagactcacggaattattcaatgtaaacaattttattgttttccttagcaa 762
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 22180 cccatataccagactcacggaattattcaatgtaaacaattttattg-tttccttagcaa 22238
Query: 763 gaccctatttggcaccattagcattgaacgacttaaaacacgatattagaacgtctgagt 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22239 gaccctatttggcaccattagcattgaacgacttaaaacacgatattagaacgtctgagt 22298
Query: 823 actattactacaagaaggttcccatacatcgatcccagatcatattcaccaatgcaacta 882
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 22299 actattactacaag-aggttcccatacatcgatccaggatcatattcaccaatgcaacta 22357
Query: 883 ttcaagtttaccaaattggaaccattagcattcaaattttaattaccacttggaaagga 941
| |||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 22358 tccaaggttaccaaattggaaccattagcattcaaa-tttaaataccacttggaaagga 22415
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6820
Number of Sequences: 1807
Number of extensions: 6820
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)