BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZA01FM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1493 1338 0.0
>3x_Contig1493
Length = 12243
Score = 1338 bits (675), Expect = 0.0
Identities = 714/723 (98%), Gaps = 3/723 (0%)
Strand = Plus / Minus
Query: 85 cctcttcagcagcggcagcagtggtttcagcagcagcagtggtttcttcagcagcagcgg 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10892 cctcttcagcagcggcagcagtggtttcagcagcagcagtggtttcttcagcagcagcgg 10833
Query: 145 tggtttcttcagtggcagcagcagaagattcagtgataaccttggtgtagacagtgtcac 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10832 tggtttcttcagtggcagcagcagaagattcagtgataaccttggtgtagacagtgtcac 10773
Query: 205 ctctggtaacaacaatggaggtcaagtattcacctggggccaaagtggcatctgtctcgg 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10772 ctctggtaacaacaatggaggtcaagtattcacctggggccaaagtggcatctgtctcgg 10713
Query: 265 ccaaatcaatggtcttggtgtaaacgacaccatcgttggtagcggtgatgacagtttgag 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10712 ccaaatcaatggtcttggtgtaaacgacaccatcgttggtagcggtgatgacagtttgag 10653
Query: 325 cagccaaggcggaggaagaagcagccaaggcagtagcagcgacggtagagaacttcattt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10652 cagccaaggcggaggaagaagcagccaaggcagtagcagcgacggtagagaacttcattt 10593
Query: 385 ttagtatctgttcttgttattaaagcgagtgaatagggatttcgggaatgaatcaaaaga 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10592 ttagtatctgttcttgttattaaagcgagtgaatagggatttcgggaatgaatcaaaaga 10533
Query: 445 aaatagaacagtcctaattggtaactaacggcaagtggaggttattgtaactatgaaagg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10532 aaatagaacagtcctaattggtaactaacggcaagtggaggttattgtaactatgaaagg 10473
Query: 505 taggaagatgagagaagccactgatatgccctgtattaatactaaaaaaatcgataaacc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10472 taggaagatgagagaagccactgatatgccctgtattaatactaaaaaaatcgataaacc 10413
Query: 565 ataaaaaataataggacaaaaaatctatatgataatactatcctcaaagtcctactaagt 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10412 ataaaaaataataggacaaaaaatctatatgataatactatcctcaaagtcctactaagt 10353
Query: 625 ctggacttgccattattgcttatacaatcacaatgacattgacatttgacagtgacggta 684
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 10352 ctggacttgccattattgcttaaacaatcacaatgacattgaca-ttgacagtgacggta 10294
Query: 685 tcgattaaccagtgctggagggtctttctaccttcctttctcttgtgattcagactatgt 744
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 10293 tcgattaaccagtgctggagggtctttctaccttcctttctcttgggattcagactatgt 10234
Query: 745 ccttctttcctttgtctacaatttctctctagctcgcaa-ttttctttttcttattacct 803
| |||||| |||||||||||||| ||||||||||||||| ||||||||| |||||||||
Sbjct: 10233 ctttcttt-ctttgtctacaattcctctctagctcgcaatttttcttttcattattacct 10175
Query: 804 aaa 806
|||
Sbjct: 10174 aaa 10172
Score = 579 bits (292), Expect = e-165
Identities = 295/296 (99%)
Strand = Plus / Minus
Query: 89 ttcagcagcggcagcagtggtttcagcagcagcagtggtttcttcagcagcagcggtggt 148
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7481 ttcagcagcggcagaagtggtttcagcagcagcagtggtttcttcagcagcagcggtggt 7422
Query: 149 ttcttcagtggcagcagcagaagattcagtgataaccttggtgtagacagtgtcacctct 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7421 ttcttcagtggcagcagcagaagattcagtgataaccttggtgtagacagtgtcacctct 7362
Query: 209 ggtaacaacaatggaggtcaagtattcacctggggccaaagtggcatctgtctcggccaa 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7361 ggtaacaacaatggaggtcaagtattcacctggggccaaagtggcatctgtctcggccaa 7302
Query: 269 atcaatggtcttggtgtaaacgacaccatcgttggtagcggtgatgacagtttgagcagc 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7301 atcaatggtcttggtgtaaacgacaccatcgttggtagcggtgatgacagtttgagcagc 7242
Query: 329 caaggcggaggaagaagcagccaaggcagtagcagcgacggtagagaacttcattt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7241 caaggcggaggaagaagcagccaaggcagtagcagcgacggtagagaacttcattt 7186
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7571
Number of Sequences: 1807
Number of extensions: 7571
Number of successful extensions: 83
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)