BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC14ZA01RM1.SCF screened BAC_end
         (909 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1654                                                        1618   0.0  

>3x_Contig1654 
          Length = 17174

 Score = 1618 bits (816), Expect = 0.0
 Identities = 848/856 (99%), Gaps = 2/856 (0%)
 Strand = Plus / Minus

                                                                        
Query: 52   gctttaatgacccgcttctgtcaactgtatagtacaaccacacaaaaccagaatatattt 111
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8675 gctttaatgacccgcttctgtcaactgtatagtacaaccacacaaaaccagaatatattt 8616

                                                                        
Query: 112  atatatatatatatatctaattaattccttcattggattccaagttgttctcgcaacctt 171
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8615 atatatatatatatatctaattaattccttcattggattccaagttgttctcgcaacctt 8556

                                                                        
Query: 172  tgattctctagttgcaacatattgatgcggttcgttgctgcttcagactccttttttctt 231
            |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 8555 tgattctctagttgcaacatattgatgcggttcgttgctgcttcagactccagttttctt 8496

                                                                        
Query: 232  ctttcacgttcaccaatccattttttccttaattcgtcaattttcagcttggattgtttc 291
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8495 ctttcacgttcaccaatccattttttccttaattcgtcaattttcagcttggattgtttc 8436

                                                                        
Query: 292  tctacctcatcattctgtgatgagccggaccattcttctttttcgttcagaagcagatcg 351
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8435 tctacctcatcattctgtgatgagccggaccattcttctttttcgttcagaagcagatcg 8376

                                                                        
Query: 352  acatgttctgtgacaattgattcgatggcagattcaataaaaaagaaaactgaatctaat 411
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8375 acatgttctgtgacaattgattcgatggcagattcaataaaaaagaaaactgaatctaat 8316

                                                                        
Query: 412  tttgcaattgtctttttgaagaatttggcagagtctagctgttcaaggttatgcaactta 471
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8315 tttgcaattgtctttttgaagaatttggcagagtctagctgttcaaggttatgcaactta 8256

                                                                        
Query: 472  ttgaatgcttggtcaatggactctttttgtagaaccttctcgaatgacccaaaaattgcc 531
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8255 ttgaatgcttggtcaatggactctttttgtagaaccttctcgaatgacccaaaaattgcc 8196

                                                                        
Query: 532  cttaaatggtccaagagtttagattttataattgttaactgttgtgatcctttatccgca 591
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8195 cttaaatggtccaagagtttagattttataattgttaactgttgtgatcctttatccgca 8136

                                                                        
Query: 592  tctgaaaatttattaacgtgctcccgcagttttataatttcatcttgtaaaatatgatgg 651
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8135 tctgaaaatttattaacgtgctcccgcagttttataatttcatcttgtaaaatatgatgg 8076

                                                                        
Query: 652  tcgttccccaattcttccagttgttcttggagaagctggttatcatccatgtagtatgtc 711
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8075 tcgttccccaattcttccagttgttcttggagaagctggttatcatccatgtagtatgtc 8016

                                                                        
Query: 712  gattttcgcaaagcagttttcaatttcttacggagttccatgacatcttcttctgttcta 771
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8015 gattttcgcaaagcagttttcaatttcttacggagttccatgacatcttcttctgttcta 7956

                                                                        
Query: 772  gcctccaacatttgcatttgagcttgagcatcaatcagcttttgggaaaggtcttttttt 831
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7955 gcctccaacatttgcatttgagcttgagcatcaatcagcttttgggaaaggtcttttttt 7896

                                                                        
Query: 832  tcattttgtaaaacttctatttcgaga-tcatattcaattcgttgtgtatgccatcttgc 890
            |||| |||||||||||||| | ||||| ||||||||||| ||||||||||||||||||||
Sbjct: 7895 tcatcttgtaaaacttcta-tccgagattcatattcaatccgttgtgtatgccatcttgc 7837

                            
Query: 891  tgaaatttcctctaaa 906
            |||| |||||||||||
Sbjct: 7836 tgaattttcctctaaa 7821


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,211
Number of Sequences: 1807
Number of extensions: 14211
Number of successful extensions: 1715
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)