BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZA02FM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1791 1580 0.0
>3x_Contig1791
Length = 39945
Score = 1580 bits (797), Expect = 0.0
Identities = 831/840 (98%), Gaps = 2/840 (0%)
Strand = Plus / Plus
Query: 86 ttatctttaaggaaggaaataaaaggtggttacttgaagtttaacaaaacccaattactc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19339 ttatctttaaggaaggaaataaaaggtggttacttgaagtttaacaaaacccaattactc 19398
Query: 146 tccaaattcaaagatataaactttgagatcttggatgaagattctgatcttcaaaagggg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19399 tccaaattcaaagatataaactttgagatcttggatgaagattctgatcttcaaaagggg 19458
Query: 206 tatttgaaagtatttattatgggggaaatagaaatgaaagtcagtacaagaaagttctct 265
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19459 tatttgaaagtacttaagatgggggaaatagaaatgaaagtcagtacaagaaagttctct 19518
Query: 266 cttgtaggaaatgtggtaaagaatcattggaagactaagtttgcgatattgactacttcc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19519 cttgtaggaaatgtggtaaagaatcattggaagactaagtttgcgatattgactacttcc 19578
Query: 326 ttcctatttttctttgatagcatgtcctggctggatccaaagatcgaactagatgaatta 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19579 ttcctatttttctttgatagcatgtcctggctggatccaaagatcgaactagatgaatta 19638
Query: 386 actaagacctcaaattacattattgatttatctcaaccgctttcttcgctgtacgaaatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19639 actaagacctcaaattacattattgatttatctcaaccgctttcttcgctgtacgaaatg 19698
Query: 446 gaatattgtaacaacctattcttaacggaaaacaagaatactgaccccaatgttttatcc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19699 gaatattgtaacaacctattcttaacggaaaacaagaatactgaccccaatgttttatcc 19758
Query: 506 attgtgaatcaaagccaaaaacgtgatataatgtttaggaatagaacagaggcattagcc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19759 attgtgaatcaaagccaaaaacgtgatataatgtttaggaatagaacagaggcattagcc 19818
Query: 566 tggaaaaactctatttatttctccggcagcatcgatggatgtgaaatagaaatcgccgga 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19819 tggaaaaactctatttatttctccggcagcatcgatggatgtgaaatagaaatcgccgga 19878
Query: 626 ctgcgtaatacatttgtggtacaaagaaggacatcagtagaagataaaatactaaagctg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19879 ctgcgtaatacatttgtggtacaaagaaggacatcagtagaagataaaatactaaagctg 19938
Query: 686 aaaagtaaccatgaacagaatatgtcgaaatggtattcgctacactcacagcttaacata 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19939 aaaagtaaccatgaacagaatatgtcgaaatggtattcgctacactcacagcttaacata 19998
Query: 746 taccttgacacggtacccttatcaacanagactagatcaaacttaatcgatcatgtcaat 805
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 19999 taccttgacacggtacccttatcaacaaagactagatcaaacttaatcgatcatgtcaat 20058
Query: 806 ggtataattaaaagaattgaaatggtctcatatcaaaacgaaagacttgatatatacgtt 865
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20059 ggtataataaaaagaatagaaatggtctcatatcaaaacgaaagacttgatatatacgtt 20118
Query: 866 aaactcttgaagcttgtatttggtct-gaaccaaat-caagtgaatattatcgatacgaa 923
|||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||
Sbjct: 20119 aaactcttgaagcttgtatttggtctggaaccaaatccaagtgaatataatcgatacgaa 20178
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7626
Number of Sequences: 1807
Number of extensions: 7626
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)