BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC14ZA02RM1.SCF screened BAC_end
         (922 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1114                                                        1459   0.0  

>3x_Contig1114 
          Length = 6488

 Score = 1459 bits (736), Expect = 0.0
 Identities = 834/861 (96%), Gaps = 5/861 (0%)
 Strand = Plus / Plus

                                                                        
Query: 49   attctccttcataacttgttctgatttggctt-ataatctctcgactttttctgttcgta 107
            ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 4592 attctccttcataacctgttctgatttggcttcataatctctcgactttttctgttcgta 4651

                                                                        
Query: 108  tacagataattctcttctaaattgagcaaactgctgtgctacctcattcttgatcacttt 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 4652 tacagataattctcttctaaattgagcaaactgctgtgctacctcattcttgatcacctt 4711

                                                                        
Query: 168  atcagtttgtttagacgttatggatcttatgacgnnattttttaactgacaggtganaga 227
            ||||||||||||||||||||||||||||||||||  ||||| ||||| || ||||| |||
Sbjct: 4712 atcagtttgtttagacgttatggatcttatgacgttattttctaacttactggtgataga 4771

                                                                        
Query: 228  cgatattatagggtcagttagaaacagactattgccattgtgataaaaacttccatccat 287
            ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4772 cgataatagagggtcagttagaaacagactattgccattgtgataaaaacttccatccat 4831

                                                                        
Query: 288  cataaaacgacttaaactggaattgctaccgatctcagaactttcagaagtagattgagc 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4832 cataaaacgacttaaactggaattgctaccgatctcagaactttcagaagtagattgagc 4891

                                                                        
Query: 348  ttcttgcaacattcctagttcttttactcttgcatcgatgtcttcccgcagtaaaactat 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4892 ttcttgcaacattcctagttcttttactcttgcatcgatgtcttcccgcagtaaaactat 4951

                                                                        
Query: 408  ggcattatgtatgttttcaggtaaactctccatggaatttatagcatcaagttgtttaga 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4952 ggcattatgtatgttttcaggtaaactctccatggaatttatagcatcaagttgtttaga 5011

                                                                        
Query: 468  tgcattttcgaaaagctcaatggctctactaagtttattcctcttgatataggattctgc 527
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5012 tgcattttcgaaaagctcaatggctctactaagtttattcctcttgatataggattctgc 5071

                                                                        
Query: 528  atcatctatcgtctcgtaaacctataatattaagaagtaacgtcataaatatcagttagt 587
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5072 atcatctatcgtctcgtaaacctataatattaagaagtaacgtcataaatatcagttagt 5131

                                                                        
Query: 588  catttgattaattcgagggttttgagtgcaaaagagaatcatacgttattaagctcggtg 647
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5132 catttgattaattcgagggttttgagtgcaaaagagaatcatacgttattaagctcggtg 5191

                                                                        
Query: 648  gtcatctttatagtcccatttcttaagaataattatcngttggaaagaagtgattttaaa 707
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 5192 gtcatctttatagtcccatttcttaagaataattatc-gttggaaagaagtgattttaaa 5250

                                                                        
Query: 708  ataatcttcaaaggtttggctgtacatgaagcgtgcctt-acgtagggcattcctccaaa 766
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 5251 ataatcttcaaaggtttggctgtacatgaagcgtgccttaacgtagggcattcctccaaa 5310

                                                                        
Query: 767  atactgtctgtcacatttgctctcttgaaaacaagtcaagaagatccttaattgcgttag 826
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 5311 atactgtctgtcacatttgctctcttgaaaacatgtcaagaagatccttaattgcgttag 5370

                                                                        
Query: 827  -accaaaaacagattaaaaaggtgcgaactggaattagaccctggtctttgaagaaattt 885
             || |||||||||||| |||| ||||||||| ||||||||||| || |||||  || |||
Sbjct: 5371 aacaaaaaacagattataaagttgcgaactgaaattagaccct-gtttttgagaaatttt 5429

                                 
Query: 886  aaaaaaaacacgttaccaaac 906
            || ||||||| |||| |||||
Sbjct: 5430 aataaaaacaggttaacaaac 5450


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6704
Number of Sequences: 1807
Number of extensions: 6704
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)