BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZA03RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1599 1566 0.0
>3x_Contig1599
Length = 10178
Score = 1566 bits (790), Expect = 0.0
Identities = 864/881 (98%), Gaps = 6/881 (0%)
Strand = Plus / Minus
Query: 49 ccaattgggtgaaaccttttcttggaaagatatctgaatcctggatcattgaacattcag 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6264 ccaattgggtgaaaccttttcttggaaagatatctgaatcctggatcattgaacattcag 6205
Query: 109 tggtcgataccaagaagggagaaatgctgacttatactaggaatttagatcatacgaaga 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6204 tggtcgataccaagaagggagaaatgctgacttatactaggaatttagatcatacgaaga 6145
Query: 169 ttataaaagtggaagaatatactaggtttgaaaaagacgggaatagcactcaggtgaaat 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6144 ttataaaagtggaagaatatactaggtttgaaaaagacgggaatagcactcaggtgaaat 6085
Query: 229 ccatggtcaagttcagtagtggatttgggattgggattagaaacagaatcgagagctggt 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6084 ccatggtcaagttcagtagtggatttgggattgggattagaaacagaatcgagagctggt 6025
Query: 289 cacatagcaagttcgatgagaatattcagaagagcaggaagggcatgactttcgttttgc 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6024 cacatagcaagttcgatgagaatattcagaagagcaggaagggcatgactttcgttttgc 5965
Query: 349 aaagactggatctctcgttaaacaaaacttcgagctgaaaacggtttatttggcctattc 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5964 aaagactggatctctcgttaaacaaaacttcgagctgaaaacggtttatttggcctattc 5905
Query: 409 tccttctgctttccagttatttatttgcatttactaccatacaagcatcgaacaacaaac 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5904 tccttctgctttccagttatttatttgcatttactaccatacaagcatcgaacaacaaac 5845
Query: 469 aatatatatactagagacatggactctcaatttacttcgtcgggtttatcttttaacctc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5844 aatatatatactagagacatggactctcaatttacttcgtcgggtttatcttttaacctc 5785
Query: 529 ccaggacttttatttatatcacaagaagcagagcagatcaaccagtaaaaaaaatgacga 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5784 ccaggacttttatttatatcacaagaagcagagcagatcaaccagtaaaaaaaatgacga 5725
Query: 589 gctaaacgttaatcacatatttatcaatataccagggcaagttccttgttagtattattt 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5724 gctaaacgttaatcacatatttatcaatataccagggcaagttccttgttagtattattt 5665
Query: 649 gatctcattattggtaatagtctacttgctttgaaactaaatcgtttattacatnattgt 708
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 5664 gatctcattattgtaaatagtctacttgctttgaaactaaatcgtttattacatatttgt 5605
Query: 709 atattattacatttgatctgaaatctata-ttatgactgaaccgagaatgggtcactccc 767
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 5604 atattattacatttgatctg-aatctatatttatgactgaaccgagaatgggtcactccc 5546
Query: 768 tttctctc-agcaaaacttatatcccatccgatttcgtcacaaatatctatccaatcacg 826
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 5545 tttctctcaagcaaaacttatatcccatccgatatcgtcacaaatatctatccaatcacg 5486
Query: 827 ttctcttaaccccggaggaccctatagattncttcttcgtcatccatctttcagacattt 886
||||| ||||||| |||||||||||||||| || |||||||||||||||| |||||||||
Sbjct: 5485 ttctc-taacccccgaggaccctatagatt-ctccttcgtcatccatcttccagacattt 5428
Query: 887 tgcattatgtcatgtgcacggaaccacattacaacttttgt 927
||||| ||||||||||||| |||||||||||| || |||||
Sbjct: 5427 tgcataatgtcatgtgcac-gaaccacattacgacatttgt 5388
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7138
Number of Sequences: 1807
Number of extensions: 7138
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)