BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZA05FM1.SCF screened BAC_end
(929 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1737 932 0.0
3x_Contig768 180 3e-45
>3x_Contig1737
Length = 17214
Score = 932 bits (470), Expect = 0.0
Identities = 490/494 (99%), Gaps = 2/494 (0%)
Strand = Plus / Minus
Query: 431 tatgtgcggtggatttgaacgctgccactgggaaacaggccaccaaagtcaagaagaaca 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17212 tatgtgcggtggatttgaacgctgccactgggaaacaggccaccaaagtcaagaagaaca 17153
Query: 491 agaagatgataaccaagaaaactgtggtggtaaaggaggaggaaccagttcaggagaagc 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17152 agaagatgataaccaagaaaactgtggtggtaaaggaggaggaaccagttcaggagaagc 17093
Query: 551 agctacaagagctggtgcaggagctggagaaaccgcctttatcggagcctgtgattgaga 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17092 agctacaagagctggtgcaggagctggagaaaccgcctttatcggagcctgtgattgaga 17033
Query: 611 tagagagagtggaggaagagggtaattctccacagcgggtcaatatggctcttgtttcgt 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17032 tagagagagtggaggaagagggtaattctccacagcgggtcaatatggctcttgtttcgt 16973
Query: 671 ccacaccactgtctcctctttctctgtctctgttcgatgggtccaaggatgaattggacg 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16972 ccacaccactgtctcctctttctctgtctctgttcgatgggtccaaggatgaattggacg 16913
Query: 731 atagtatcgccggcagccagcggatcggtggttttcacaacgatgatgacgatcttgtgc 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16912 atagtatcgccggcagccagcggatcggtggttttcacaacgatgatgacgatcttgtgc 16853
Query: 791 aaagcctagatcttgaattctttatgcctttctatttcacttccaagcttgatgattcct 850
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 16852 aaagcctagatcttgaattctttatgcc-ttctatttcacttccaagcttgatgattcct 16794
Query: 851 gatctcctactgcagtcaccagagatggcagaaatcgtttgatttctttgtgaaccagac 910
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 16793 gatctcctactgcagtcaccagagatggcag-aatcgtttgatttctttgtgaaccagac 16735
Query: 911 tttaaaaatgttgg 924
|| |||| ||||||
Sbjct: 16734 ttcaaaattgttgg 16721
>3x_Contig768
Length = 2062
Score = 180 bits (91), Expect = 3e-45
Identities = 91/91 (100%)
Strand = Plus / Minus
Query: 85 tgaaatgaatcatcatttcttctacaataccaataagacaaagggtaaagtggtaaagac 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 tgaaatgaatcatcatttcttctacaataccaataagacaaagggtaaagtggtaaagac 32
Query: 145 cgtgtcctgtattcagccattgattattgcc 175
|||||||||||||||||||||||||||||||
Sbjct: 31 cgtgtcctgtattcagccattgattattgcc 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7043
Number of Sequences: 1807
Number of extensions: 7043
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 2
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)