BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZA05RM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1660 1608 0.0
>3x_Contig1660
Length = 13166
Score = 1608 bits (811), Expect = 0.0
Identities = 868/881 (98%), Gaps = 6/881 (0%)
Strand = Plus / Plus
Query: 49 aatcgtttgaacaattcatagaagtgttcagttcgtttgaaaaagtgaaccataacgaag 108
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 11060 aatcgtttgaacaattcaaagaagtgttcagttcgtttgaaaaagtgaaccataacgaag 11119
Query: 109 tcatcaagatggaaaacgatttaaagaagttaaagacgctccatttgaacaatctaatag 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11120 tcatcaagatggaaaacgatttaaagaagttaaagacgctccatttgaacaatctaatag 11179
Query: 169 atttacaatggaacttacaaaattgtgtcaccaacggtataatgagtatggtacacgagg 228
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 11180 atttacaatggaacttacaaaattgtgtcaccaacggtataatgagtatgggacacgagg 11239
Query: 229 atacgaaccgggtattactagcacaagatgaattagacatgacaatcaattttgtcagaa 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11240 atacgaaccgggtattactagcacaagatgaattagacatgacaatcaattttgtcagaa 11299
Query: 289 atgccatggacaattaattaaagataaaatagttttagtacaataatctgatgacacaca 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11300 atgccatggacaattaattaaagataaaatagttttagtacaataatctgatgacacaca 11359
Query: 349 cagaaaagggttttctttcgattaaacatgatacatataataagtcagatacaagtatat 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11360 cagaaaagggttttctttcgattaaacatgatacatataataagtcagatacaagtatat 11419
Query: 409 acatatttatacatatcgacacatgtaaaaatcgcatagaaagaggattgagaaatggga 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11420 acatatttatacatatcgacacatgtaaaaatcgcatagaaagaggattgagaaatggga 11479
Query: 469 acatcaaagtacagcaaaacaataggatattaagaaacatagtagacctctccaaaagaa 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11480 acatcaaagtacagcaaaacaataggatattaagaaacatagtagacctctccaaaagaa 11539
Query: 529 acacacacaaaataagaataattcatggaaaaaccacgaattaaaccacacttttattaa 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11540 acacacacaaaataagaataattcatggaaaaaccacgaattaaaccacacttttattaa 11599
Query: 589 gagagacctccaatgcaactaacagataaccccaggttgctaaaccagacccaagtctca 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11600 gagagacctccaatgcaactaacagataaccccaggttgctaaaccagacccaagtctca 11659
Query: 649 taacaaaaaaaaaactttatttttttttggtagaatctctccctcaaaagaaaacagaga 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11660 taacaaaaaaaaaactttatttttttttggtagaatctctccctcaaaagaaaacagaga 11719
Query: 709 gggtagagacgacacacagcacgagttacacgacgacacgacacgacacttcacactaaa 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11720 gggtagagacgacacacagcacgagttacacgacgacacgacacgacacttcacactaaa 11779
Query: 769 tcataactcaatataaaaacacacgggttgataataaaagtcttcagggattgaaacana 828
|||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
Sbjct: 11780 tcataactcaatataaaaacacac-ggttgataataaaagtcttca-ggattgaaacaaa 11837
Query: 829 aaaaaaacag-acagcccaattaacaattttcactgttcagaagagtttcaaagaaaa-- 885
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 11838 aaaaaaacagaacagcccaattaacaatttcaactgttcagaagagtttcaaagaaaaat 11897
Query: 886 tttagagtgggag-aaaggatggtttgaaagaaatatgaga 925
|| |||||||||| |||||||||||||||||||||| ||||
Sbjct: 11898 ttaagagtgggagaaaaggatggtttgaaagaaataagaga 11938
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9767
Number of Sequences: 1807
Number of extensions: 9767
Number of successful extensions: 97
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)