BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZA06FM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig251 1463 0.0
>3x_Contig251
Length = 1124
Score = 1463 bits (738), Expect = 0.0
Identities = 831/855 (97%), Gaps = 6/855 (0%)
Strand = Plus / Minus
Query: 88 actgaagataagcctgaattctccttcttcgatggtcctccattcgctactggtactccc 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934 actgaagataagcctgaattctccttcttcgatggtcctccattcgctactggtactccc 875
Query: 148 cactatggtcacttgctagcgtccactgtgaaagatatcgttccaagatatgctaccatg 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 cactatggtcacttgctagcgtccactgtgaaagatatcgttccaagatatgctaccatg 815
Query: 208 acaggacatcatgttgaaagaagattcggttgggatacacatggtttgccaattgaacac 267
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 acaggacatcacgttgaaagaagattcggttgggatacacatggtttgccaattgaacac 755
Query: 268 atcattgacaagaaactgaacatcacctgtaaggaggatgtgtatgcattcggtatcgac 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 atcattgacaagaaactgaacatcacctgtaaggaggatgtgtatgcattcggtatcgac 695
Query: 328 aactataacaatgaatgtagggctattgtttccacttacgctgaggaatggagaaagact 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 aactataacaatgaatgtagggctattgtttccacttacgctgaggaatggagaaagact 635
Query: 388 atcggccgtttaggtcgttggattgatttcgatgacgattacaagacaatgtatccaact 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 atcggccgtttaggtcgttggattgatttcgatgacgattacaagacaatgtatccaact 575
Query: 448 ttcatggaatctatctggtgggcgttcaaggaattatttgacaaggaccaagtttaccgt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ttcatggaatctatctggtgggcgttcaaggaattatttgacaaggaccaagtttaccgt 515
Query: 508 ggttacaaagttatgccttattcgaccggttgtaccaccccattgagtaactttgaagct 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ggttacaaagttatgccttattcgaccggttgtaccaccccattgagtaactttgaagct 455
Query: 568 caacaaaactataaggacgtcaatgatcctgcaattaccattgcattcaacgttattggt 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 caacaaaactataaggacgtcaatgatcctgcaattaccattgcattcaacgttattggt 395
Query: 628 caagaaaagactaaacttgttgcttggactactaccccttggactttaccatctaacttg 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 caagaaaagactaaacttgttgcttggactactaccccttggactttaccatctaacttg 335
Query: 688 gcattatgtgtcaatcctgagttcgaatacgtcaagatttacgatgntaaacaggatacc 747
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 334 gcattatgtgtcaatcctgagttcgaatacgtcaagatttacgatgaaaacaaggatacc 275
Query: 748 tacttcatccttttggaatctttgatcanaactctcttacagaaaccagctcaagaaaaa 807
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 274 tacttcatccttttggaatctttgatcaaaactctctacaagaaaccagctcaagaaaaa 215
Query: 808 tttanggtagttagaaagattaaaggtaanggattttgttcggttttgaaatatgaacca 867
| || |||||| |||||| || ||||| ||| |||| |||| ||||||||||||||||
Sbjct: 214 tataaggtagtagaaaagataaagggtaa-gga-tttggtcgg-tttgaaatatgaacca 158
Query: 868 ttgnttcccatactttgtagacgaatacaaagacaccggtttcacgattcttaggtgact 927
||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 157 ttg-ttcccatactttgtagacgaatacaaagacaccggtttca-gagtcttaggtgact 100
Query: 928 cataacgtttctaac 942
||| |||||||||||
Sbjct: 99 cat-acgtttctaac 86
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5840
Number of Sequences: 1807
Number of extensions: 5840
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)