BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC14ZA06RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1645 1663 0.0
>3x_Contig1645
Length = 12736
Score = 1663 bits (839), Expect = 0.0
Identities = 879/890 (98%), Gaps = 2/890 (0%)
Strand = Plus / Minus
Query: 48 gtagcattttcggattgagtttggattctcatttcaaatgttctcaaagatctcaataac 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7846 gtagcattttcggattgagtttggattctcatttcaaatgttctcaaagatctcaataac 7787
Query: 108 aggaaggcctccaaattagcaatatttgtacccaaatagattctatcagttctcaatttt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7786 aggaaggcctccaaattagcaatatttgtacccaaatagattctatcagttctcaatttt 7727
Query: 168 gaagcaacttctttatccttgacggcgagaacaccggctaaaagatcatagtgaccaccg 227
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 7726 gaagcaacttctttatccttgacggcgagaacaccggctaaaagatcagagtgaccaccg 7667
Query: 228 aagtatttagtcgcagaatgtagaattacatcaactccgaaatcccaaggattttgcaac 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7666 aagtatttagtcgcagaatgtagaattacatcaactccgaaatcccaaggattttgcaac 7607
Query: 288 ggaggtggtgcaaaagtggaatcaatcaccaagatggcacctttactatgtgtagcatca 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7606 ggaggtggtgcaaaagtggaatcaatcaccaagatggcacctttactatgtgtagcatca 7547
Query: 348 gcgaaagctttgatatcgaatgaggtcccgtacgggttaactggagtctctatgtgaacc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7546 gcgaaagctttgatatcgaatgaggtcccgtacgggttaactggagtctctatgtgaacc 7487
Query: 408 acatcgcctttacccgcatgttgcaaaatttcatcaatttccaacttgtgttgctccaaa 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7486 acatcgcctttacccgcatgttgcaaaatttcatcaatttccaacttgtgttgctccaaa 7427
Query: 468 ttccaattcctagtgtgaatatcagcaatactacggcacccatgatacccttcaccgata 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7426 ttccaattcctagtgtgaatatcagcaatactacggcacccatgatacccttcaccgata 7367
Query: 528 aaaagtctctttgggttataatacgttagcatagcaaagtatgcagccaaaccgttggca 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7366 aaaagtctctttgggttataatacgttagcatagcaaagtatgcagccaaaccgttggca 7307
Query: 588 tacaccacggcttcaccttccaaaaccttcgaaaggacagattccaccctaagggagttt 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7306 tacaccacggcttcaccttccaaaaccttcgaaaggacagattccaccctaagggagttt 7247
Query: 648 ggatgagccaatctggaatatataggcttcttttccaagacactgaaatcttctcgctca 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7246 ggatgagccaatctggaatatataggcttcttttccaagacactgaaatcttctcgctca 7187
Query: 708 ttccatggaatcaaatcaacttcttcgtacctgaacgtggtagcgacattgattggagaa 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7186 ttccatggaatcaaatcaacttcttcgtacctgaacgtggtagcgacattgattggagaa 7127
Query: 768 actatgtcagtgactctgttgtgcttgtcatctgcgtggactaactctgttgataacgac 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7126 actatgtcagtgactctgttgtgcttgtcatctgcgtggactaactctgttgataacgac 7067
Query: 828 tttattataggatagaaattc-agttttacggcttgattaaatattactgggcaatgatc 886
|||| ||| ||||||||||| ||||||||||||||||||||||||||||| | |||||
Sbjct: 7066 attataataagatagaaattcaagttttacggcttgattaaatattactggcaattgatc 7007
Query: 887 ctagntttttatggtgggatggattcttatattgactgaatatctgtcct 936
|||| ||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 7006 ctagttttttat-gttggatggattcttatattgactgaatatctgtcct 6958
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6408
Number of Sequences: 1807
Number of extensions: 6408
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)